View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3902_low_1 (Length: 1150)
Name: NF3902_low_1
Description: NF3902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3902_low_1 |
 | |
|
| [»] scaffold0137 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 701; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 701; E-Value: 0
Query Start/End: Original strand, 58 - 803
Target Start/End: Original strand, 3896550 - 3897297
Alignment:
| Q |
58 |
acatctccttcagaggaagaatacacc--gtccgtcaacctatatggaatatcagtgctcaatgctcgtctagctggtcctgcaagaagccaaatatagc |
155 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3896550 |
acatctccttcagaggaagaatacaccccgtccgtcaacctatatggaatatcagtgctcaatgctcgtctagctggtcctgcaagaagccaaatatagc |
3896649 |
T |
|
| Q |
156 |
tttaacttagattatgatcaacttgggataatattataaagagaccaatgattattaatcaaaatgctttgacgtgatgattatggtatagacattttac |
255 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3896650 |
tttaacttagattatgatcaactttggataatattataaagagatcaatgattattaatcaaaatgctttgacgtgatgattattgtatagacattttac |
3896749 |
T |
|
| Q |
256 |
catgtcatcaaaagtccagagggtgatgttgtttctcaaaagttgcatgcgaaccgtgctgtctttgtagtattcatctcccaatttgagctcattacgt |
355 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3896750 |
catgtcatcaaaagtccagaggatgatgttgtttctcaaaagttgcatgcgaaccgtgctgtctttgtagtattcatctcccaatttgagctcattacgt |
3896849 |
T |
|
| Q |
356 |
gcttcatctaaagcctatcaacaaggaaaagaaaattgattcagtacatgtacaagccaaacatgaacagaaaagagagacacataaagcatttgataag |
455 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3896850 |
gcttcatctaaagcctatcaacaaggaaaagaaaattgattcagtacatgtacaagccaaacatgaacagaaaagagagacacataaagcatttgataag |
3896949 |
T |
|
| Q |
456 |
aataggcctttgttcattcaccgacacatataattacatgcaatattattaattttctcaaactattatcattgttgacgtgtccgtgcttcatagaaaa |
555 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3896950 |
aataggtctttgttcattcaccgacacatataattacatgcaatattattaattttctcaaactattatcattgttgacgtatccgtgcttcatagaaaa |
3897049 |
T |
|
| Q |
556 |
cattcatcacaaattaaaggaagaacacaactattagtataacttcatagtgcatatatccctcatagtcattgcaaaacaaacaaacaagattggatta |
655 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3897050 |
cattcatcacaaattaatggaagaacacaactattagtataacttcatagtgcatatatccctcatagtcattgcaaaacaaacaaacaagattggatta |
3897149 |
T |
|
| Q |
656 |
acacaaacctgtctagccatgtcaagaccttcgtcaaaccggttaagaatttcataatagaaaaccgagaaattcaaagccaaacccaatcttataggat |
755 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3897150 |
acacaaacctgtctagccatgtcaagaccttcgtcaaaccggttaagaatttcataatagaaaaccgagaaattcaaagccaaacccaatcttataggat |
3897249 |
T |
|
| Q |
756 |
gagaagatcgaagatccgccgtagcaatatccttcaaacaatcacaac |
803 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
3897250 |
gagaagatcgaagatctgccgcagcaatatccttcaaacaatcacaac |
3897297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 242; E-Value: 1e-133
Query Start/End: Original strand, 897 - 1150
Target Start/End: Original strand, 3898713 - 3898966
Alignment:
| Q |
897 |
cctgtgcagccttgtaagacaaaataatatcctcaacagcagattttttgtcatcaccaatcttaaactcagccatatacctttgataatcacctttcat |
996 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3898713 |
cctgtgcagccttgtaagacaagataatatcctcaacagcagattttttgtcatcaccaatcttaaactcagccatatacctttgataatcacctttcat |
3898812 |
T |
|
| Q |
997 |
ctgataataaacaaccctaatctcactcgatgaagcagaaggtataagtttcgaatccagcaactccagaatactaccacaaacattctccaactccgat |
1096 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
3898813 |
ctgataataaacaaccctaatctcactcgatgaagcagaaggtataagtttcgaatccagcaactccagaatactaccacaaacattctccaactcggat |
3898912 |
T |
|
| Q |
1097 |
tcaactttggacttgtatttcttaacatgcacaacgtgatcatcttcattcttt |
1150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3898913 |
tcaactttggacttgtatttcttaacatgcacaaagtgatcatcttcattcttt |
3898966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 137; E-Value: 6e-71
Query Start/End: Original strand, 897 - 1137
Target Start/End: Complemental strand, 46283571 - 46283331
Alignment:
| Q |
897 |
cctgtgcagccttgtaagacaaaataatatcctcaacagcagattttttgtcatcaccaatcttaaactcagccatatacctttgataatcacctttcat |
996 |
Q |
| |
|
|||||||||| ||||||||||| ||| |||||||| ||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
46283571 |
cctgtgcagctttgtaagacaacatagtatcctcagcagcagattttttctcatcaccaatcttaaactcagccaaatacctatgataatcacctttcat |
46283472 |
T |
|
| Q |
997 |
ctgataataaacaaccctaatctcactcgatgaagcagaaggtataagtttcgaatccagcaactccagaatactaccacaaacattctccaactccgat |
1096 |
Q |
| |
|
|| |||||||| |||| || | |||||||| ||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
46283471 |
cttataataaaaaaccttactttcactcgaagaagctgaaggtataagattcgaatccaacaactccagaatactaccacaaacattcgtcaactctgat |
46283372 |
T |
|
| Q |
1097 |
tcaactttggacttgtatttcttaacatgcacaacgtgatc |
1137 |
Q |
| |
|
||||||||||| |||| | ||| ||| ||||||| ||||| |
|
|
| T |
46283371 |
tcaactttggatctgtaatccttcacaagcacaacatgatc |
46283331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 640 - 789
Target Start/End: Complemental strand, 46283795 - 46283646
Alignment:
| Q |
640 |
aaacaagattggattaacacaaacctgtctagccatgtcaagaccttcgtcaaaccggttaagaatttcataatagaaaaccgagaaattcaaagccaaa |
739 |
Q |
| |
|
||||||||| ||||||||||||||||| | ||||||||| | ||| |||| | | || |||||||| ||||||||||| |||||||| | ||||||| |
|
|
| T |
46283795 |
aaacaagatcagattaacacaaacctgtttggccatgtcacaagctttgtcagattgattgagaatttcgtaatagaaaacagagaaattgagagccaaa |
46283696 |
T |
|
| Q |
740 |
cccaatcttataggatgagaagatcgaagatccgccgtagcaatatcctt |
789 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||| | |||||||||||| |
|
|
| T |
46283695 |
cccaatcttataggatgagttgatggaagatccgcagcagcaatatcctt |
46283646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 114 - 228
Target Start/End: Complemental strand, 46285347 - 46285233
Alignment:
| Q |
114 |
tcaatgctcgtctagctggtcctgcaagaagccaaatatagctttaacttagattatgatcaacttgggataatatta--taaagagaccaatgattatt |
211 |
Q |
| |
|
|||| |||| ||||||||||||||| |||| ||||||||||| |||||| ||||||||||||| |||| ||||||| | ||||||||||||||||| |
|
|
| T |
46285347 |
tcaaggctcatctagctggtcctgc-agaatccaaatatagc-ttaactcagattatgatcaatttggagcaatattaggaagagagaccaatgattatt |
46285250 |
T |
|
| Q |
212 |
aatcaaaatgctttgac |
228 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
46285249 |
aattaaaatgctttgac |
46285233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 400
Target Start/End: Complemental strand, 46285194 - 46285038
Alignment:
| Q |
247 |
acattttaccatgtcatcaaaagtccagagggtgatgttgtttctcaaaagttgcatgcgaaccgtgctgtctttgtagtattcatctcccaatttg--- |
343 |
Q |
| |
|
|||||||||| | ||||| ||||||| ||||||| ||||| ||||||||||||||| || ||||||||||||||| |||| ||||||||| || |
|
|
| T |
46285194 |
acattttacctggacatcagaagtccaaagggtgaggttgtctctcaaaagttgcattataagtgtgctgtctttgtaggattcttctcccaatgtgtcc |
46285095 |
T |
|
| Q |
344 |
agctcattacgtgcttcatctaaagcctatcaacaaggaaaagaaaattgattcagt |
400 |
Q |
| |
|
|| ||| | |||||| || |||||||||| | ||||||||||| |||| |||||| |
|
|
| T |
46285094 |
agttcagcaattgcttcctcaaaagcctatccagaaggaaaagaatattgtttcagt |
46285038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137 (Bit Score: 694; Significance: 0; HSPs: 2)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 694; E-Value: 0
Query Start/End: Original strand, 19 - 803
Target Start/End: Original strand, 4173 - 4953
Alignment:
| Q |
19 |
taattaacacttatatggaatgactaaaagtctaaaatgacatctccttcagaggaagaatacacc--gtccgtcaacctatatggaatatcagtgctca |
116 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
4173 |
taattaacacttatatggaatgactaaaa--------tgacatctccttcagaggaagaatacaccccgtctgtcaacctatatggaatatcagtgctca |
4264 |
T |
|
| Q |
117 |
atgctcgtctagctggtcctgcaagaagccaaatatagctttaacttagattatgatcaacttgggataatattataaagagaccaatgattattaatca |
216 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4265 |
atgctcgtctagctggtcctgcatgaagccaaatatagctttaacttagattatgatcaacttgggataatattataaagagaccaatgattattaatca |
4364 |
T |
|
| Q |
217 |
aaatgctttgacgtgatgattatggtatagacattttaccatgtcatcaaaagtccagagggtgatgttgtttctcaaaagttgcatgcgaaccgtgctg |
316 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4365 |
aaatgctttgacgtgatgattattgtatagacattttaccgtgtcatcaaaagtccagagggtgatgttgtttctcaaaagttgcatgcgaaccgtgctg |
4464 |
T |
|
| Q |
317 |
tctttgtagtattcatctcccaatttgagctcattacgtgcttcatctaaagcctatcaacaaggaaaagaaaattgattcagtacatgtacaagccaaa |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
4465 |
tctttgtagtattcatctcccaatttgagctcattacgtgcttcatctaaagcctatcaacaaggaaaataaaattgattcagtacaagtacaagccaaa |
4564 |
T |
|
| Q |
417 |
catgaacagaaaagagagacacataaagcatttgataagaataggcctttgttcattcaccgacacatataattacatgc--aatattattaattttctc |
514 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4565 |
catgaacagaaaagagagacacataaagcatttgataagaataggcctttgttcattcacctacacatataattacatgcttaatattattaattttctc |
4664 |
T |
|
| Q |
515 |
aaactattatcattgttgacgtgtccgtgcttcatagaaaacattcatcacaaattaaaggaagaacacaactattagtataacttcatagtgcatatat |
614 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4665 |
aaactattatcattgttgacgtatccgtgcttcatagaaaacattcatcacaaattaatggaagaacacaactattagtataacttcatagtgcatatat |
4764 |
T |
|
| Q |
615 |
ccctcatagtcattgcaaaacaaacaaacaagattggattaacacaaacctgtctagccatgtcaagaccttcgtcaaaccggttaagaatttcataata |
714 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4765 |
ccctcatagtcattgcaaaacaaacaaacaagattggattaacacaaacctgtctagccatgtcaagaccttcgtcaaaccggttaagaatttcataata |
4864 |
T |
|
| Q |
715 |
gaaaaccgagaaattcaaagccaaacccaatcttataggatgagaagatcgaagatccgccgtagcaatatccttcaaacaatcacaac |
803 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
4865 |
gaaaaccgagaaattcaaagccaaacccaatcttataggatgagaagatcgaagatccgcagcagcaatatccttcaaacaatcacaac |
4953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137; HSP #2
Raw Score: 242; E-Value: 1e-133
Query Start/End: Original strand, 897 - 1150
Target Start/End: Original strand, 5044 - 5297
Alignment:
| Q |
897 |
cctgtgcagccttgtaagacaaaataatatcctcaacagcagattttttgtcatcaccaatcttaaactcagccatatacctttgataatcacctttcat |
996 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5044 |
cctgtgcagccttgtaagacaagataatatcctcaacagcagattttttgtcatcaccaatcttaaactcagccatatacctttgataatcacctttcat |
5143 |
T |
|
| Q |
997 |
ctgataataaacaaccctaatctcactcgatgaagcagaaggtataagtttcgaatccagcaactccagaatactaccacaaacattctccaactccgat |
1096 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5144 |
ctgataataaacaaccctaatctcactcgatgaagcagaaggtataagtttcgaatccagcaactccagaatactaccacaaacattctccaactctgat |
5243 |
T |
|
| Q |
1097 |
tcaactttggacttgtatttcttaacatgcacaacgtgatcatcttcattcttt |
1150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5244 |
tcaactttggacttgtatttcttaacatgcacaaagtgatcatcttcattcttt |
5297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 957 - 998
Target Start/End: Complemental strand, 27125481 - 27125440
Alignment:
| Q |
957 |
tcttaaactcagccatatacctttgataatcacctttcatct |
998 |
Q |
| |
|
||||||||||||| | |||||| ||||||||||||||||||| |
|
|
| T |
27125481 |
tcttaaactcagcaagatacctatgataatcacctttcatct |
27125440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 707 - 744
Target Start/End: Original strand, 39356413 - 39356450
Alignment:
| Q |
707 |
tcataatagaaaaccgagaaattcaaagccaaacccaa |
744 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
39356413 |
tcataatagaaaactgagaaattcaaagccagacccaa |
39356450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University