View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3902_low_12 (Length: 238)
Name: NF3902_low_12
Description: NF3902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3902_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 2 - 222
Target Start/End: Complemental strand, 7948134 - 7947914
Alignment:
| Q |
2 |
tgtcacgttaatttgtactataacaagaaattatgtgtatttattctagtgttattttaatctcttattaattttcctattaaacaacataaaatttgaa |
101 |
Q |
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| T |
7948134 |
tgtcacgtcaatttgtactataacaagaaatcatgtgtatttattctagtgttattttaatctcttgttaattttcctattaaacaacataaaatttgaa |
7948035 |
T |
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| Q |
102 |
gnnnnnnnctttctattaaaactgagaccagtccaatatattttctaatattaatttaattttacaagttgcaaaacaatatcactatctaacggggcca |
201 |
Q |
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| T |
7948034 |
gtttttttctttctattaaaactgagaccagtccaatatattttctaatattaatttaattttacaagttgcaaaacaatatcactatctaacggggcca |
7947935 |
T |
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| Q |
202 |
agattcgtaaaacaagctgct |
222 |
Q |
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||||||||||||||||||||| |
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| T |
7947934 |
agattcgtaaaacaagctgct |
7947914 |
T |
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