View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3902_low_2 (Length: 604)
Name: NF3902_low_2
Description: NF3902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3902_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 7 - 358
Target Start/End: Complemental strand, 37337875 - 37337524
Alignment:
| Q |
7 |
ggaggagcagagagacaatgaatccaaacccatgagtctggctactagccctgggggtttatcacacccttcatcatcatcactgctaattgataataag |
106 |
Q |
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| T |
37337875 |
ggaggagcactgagacaatgaatccaaacccatgagtctggctactagccctgggggtttatcacacccttcatcatcatcactactaattgataataag |
37337776 |
T |
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| Q |
107 |
gcaaagttaaaatcagtacttgcaatattactaggattttctccattctcatccatctttatctgaaacaattgtaataataataagaaagggtcgtgct |
206 |
Q |
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| T |
37337775 |
gcaaagttaaaatcagtacttgcaatattactaggattttctccattctcatccatctttatctgaaacaattgtaataataataagaaagggtcgtgct |
37337676 |
T |
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| Q |
207 |
aacaaattctataagggcacttgttaagaagcttaaaaaggaagttttaagtagaaaaagtcaatttctaaagtttcaaagcccatcatttccaagataa |
306 |
Q |
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| T |
37337675 |
aacaaattccgtaagggcacttgttaagaagcttaaaaaggaagttttaagtagaaaaagtcaatttctaaagtttcaaagcccatcatttccaagataa |
37337576 |
T |
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| Q |
307 |
aatttctagtttaaacataacaaatgacattagggccctgtttaacatttct |
358 |
Q |
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| T |
37337575 |
aatttctagtttaaacataacaaatgtcattagggccctgtttaacatttct |
37337524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 441 - 585
Target Start/End: Complemental strand, 37337441 - 37337297
Alignment:
| Q |
441 |
tcacactggtgtttacctgtgacattggcatgatttcaatgttttcctttgcgtggtttgaaacatctacagaaaaatgagcaaaaatattcagaatagg |
540 |
Q |
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| T |
37337441 |
tcacactggtgtttacctgtgacattggcatgatttcaatgttttcctttgcgtggtttgaaacatctacagaaaaatgagcaaaaatattcagaatagg |
37337342 |
T |
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| Q |
541 |
aacatcacattcacagacactagaaagaatgaaactatatatatt |
585 |
Q |
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| T |
37337341 |
aacatcacattcacagacactagaaagaatgaaactatatatatt |
37337297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 131 - 179
Target Start/End: Complemental strand, 46056454 - 46056406
Alignment:
| Q |
131 |
atattactaggattttctccattctcatccatctttatctgaaacaatt |
179 |
Q |
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| T |
46056454 |
atattactcggacttgctccattctcatccacctttatctaaaacaatt |
46056406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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