View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3902_low_4 (Length: 435)
Name: NF3902_low_4
Description: NF3902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3902_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 397; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 17 - 429
Target Start/End: Complemental strand, 45273959 - 45273547
Alignment:
| Q |
17 |
cagacggatcagacacgatgaatttgaatactggtattgtgatccaggattgcaatatcatcccagaagcagcattgttcccagatagattcacaattcg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
45273959 |
cagacggatcagacacgatgaatttgaatactggtattgtgatccaggattgcaatatcatcccagaagcagcattgttcccagaaagattcacaattcg |
45273860 |
T |
|
| Q |
117 |
gtcttacttgggcagaccatggaagtatttagcaaagactgtcgtcatggaatccaccattggtgatttcattcattcagatggatggaccatttggcaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
45273859 |
gtcttacttgggcagaccatggaagtatttagcaaagactgtcgtcatggaatccaccattggtgatttcattcatccagatggatggaccatttggcaa |
45273760 |
T |
|
| Q |
217 |
ggagaacaaaatcacaacacatgttactatgcagagtatgccaacaccggacctggtgccaatgttgcgaggagggtcaagtggaagggttatcacggtg |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45273759 |
ggagaacaaaatcacaacacatgttactatgcagagtatgcaaacaccggacctggtgccaatgttgcgaggagggtcaagtggaagggttatcacggtg |
45273660 |
T |
|
| Q |
317 |
tcattagcagggccgaggctaacaaattcacagctggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctca |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45273659 |
tcattagcagggccgaggctaacaaattcacagctggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctca |
45273560 |
T |
|
| Q |
417 |
ctacctttgcttc |
429 |
Q |
| |
|
||||||| ||||| |
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|
| T |
45273559 |
ctaccttggcttc |
45273547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 17 - 429
Target Start/End: Complemental strand, 45282203 - 45281791
Alignment:
| Q |
17 |
cagacggatcagacacgatgaatttgaatactggtattgtgatccaggattgcaatatcatcccagaagcagcattgttcccagatagattcacaattcg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
45282203 |
cagacggatcagacacgatgaatttgaatactggtattgtgatccaggattgcaatatcatcccagaagcagcattgttcccagaaagattcacaattcg |
45282104 |
T |
|
| Q |
117 |
gtcttacttgggcagaccatggaagtatttagcaaagactgtcgtcatggaatccaccattggtgatttcattcattcagatggatggaccatttggcaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
45282103 |
gtcttacttgggcagaccatggaagtatttagcaaagactgtcgtcatggaatccaccattggtgatttcattcatccagatggatggaccatttggcaa |
45282004 |
T |
|
| Q |
217 |
ggagaacaaaatcacaacacatgttactatgcagagtatgccaacaccggacctggtgccaatgttgcgaggagggtcaagtggaagggttatcacggtg |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45282003 |
ggagaacaaaatcacaacacatgttactatgcagagtatgcaaacaccggacctggtgccaatgttgcgaggagggtcaagtggaagggttatcacggtg |
45281904 |
T |
|
| Q |
317 |
tcattagcagggccgaggctaacaaattcacagctggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctca |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45281903 |
tcattagcagggccgaggctaacaaattcacagctggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctca |
45281804 |
T |
|
| Q |
417 |
ctacctttgcttc |
429 |
Q |
| |
|
||||||| ||||| |
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|
| T |
45281803 |
ctaccttggcttc |
45281791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 40 - 429
Target Start/End: Complemental strand, 45293520 - 45293131
Alignment:
| Q |
40 |
ttgaatactggtattgtgatccaggattgcaatatcatcccagaagcagcattgttcccagatagattcacaattcggtcttacttgggcagaccatgga |
139 |
Q |
| |
|
||||||||||||||||||||||| | |||||||| |||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||| |
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|
| T |
45293520 |
ttgaatactggtattgtgatccaaggctgcaatattgtcccagaagcagcattgttccctcaaagattcacaattaaatcttacttgggcagaccatgga |
45293421 |
T |
|
| Q |
140 |
agtatttagcaaagactgtcgtcatggaatccaccattggtgatttcattcattcagatggatggaccatttggcaaggagaacaaaatcacaacacatg |
239 |
Q |
| |
|
|| |||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||| | | |||||||| |
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|
| T |
45293420 |
aggttttagcaaagacggtcgtcatggaatccaccattggtgattttattcatccagatggatggaccccttggcaaggagaacattttgaaaacacatg |
45293321 |
T |
|
| Q |
240 |
ttactatgcagagtatgccaacaccggacctggtgccaatgttgcgaggagggtcaagtggaagggttatcacggtgtcattagcagggccgaggctaac |
339 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||| |||| |||||| |||||||||||||||||||||||| |||||||||||||||||||| | |
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|
| T |
45293320 |
ttactatgcagagtacgccaacactggacctggtgccaatattgccaggaggatcaagtggaagggttatcacggtgccattagcagggccgaggctacc |
45293221 |
T |
|
| Q |
340 |
aaattcacagctggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctcactacctttgcttc |
429 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||||||| ||||| |||||||||| ||||||| |||||||| | |||||| ||||| |
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|
| T |
45293220 |
aaattcactgctggtttatggctccaagctggacccaagtccgcagccgaatggttgactggtcttaatgttcctaattaccttggcttc |
45293131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 40 - 429
Target Start/End: Complemental strand, 45302480 - 45302091
Alignment:
| Q |
40 |
ttgaatactggtattgtgatccaggattgcaatatcatcccagaagcagcattgttcccagatagattcacaattcggtcttacttgggcagaccatgga |
139 |
Q |
| |
|
||||||||||||||||||||||| | |||||||| |||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||| |
|
|
| T |
45302480 |
ttgaatactggtattgtgatccaaggctgcaatattgtcccagaagcagcattgttccctcaaagattcacaattaaatcttacttgggcagaccatgga |
45302381 |
T |
|
| Q |
140 |
agtatttagcaaagactgtcgtcatggaatccaccattggtgatttcattcattcagatggatggaccatttggcaaggagaacaaaatcacaacacatg |
239 |
Q |
| |
|
|| |||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||| | | |||||||| |
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|
| T |
45302380 |
aggttttagcaaagacggtcgtcatggaatccaccattggtgattttattcatccagatggatggaccccttggcaaggagaacattttgaaaacacatg |
45302281 |
T |
|
| Q |
240 |
ttactatgcagagtatgccaacaccggacctggtgccaatgttgcgaggagggtcaagtggaagggttatcacggtgtcattagcagggccgaggctaac |
339 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||| |||| |||||| |||||||||||||||||||||||| |||||||||||||||||||| | |
|
|
| T |
45302280 |
ttactatgcagagtacgccaacactggacctggtgccaatattgccaggaggatcaagtggaagggttatcacggtgccattagcagggccgaggctacc |
45302181 |
T |
|
| Q |
340 |
aaattcacagctggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctcactacctttgcttc |
429 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||||||| ||||| |||||||||| ||||||| |||||||| | |||||| ||||| |
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|
| T |
45302180 |
aaattcactgctggtttatggctccaagctggacccaagtccgcagccgaatggttgactggtcttaatgttcctaattaccttggcttc |
45302091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 35 - 429
Target Start/End: Complemental strand, 45270409 - 45269985
Alignment:
| Q |
35 |
tgaatttgaatactggtattgtgatccaggattgcaatatcatcccagaagcagcattgttcccagatagattcacaattcggtcttacttgggcagacc |
134 |
Q |
| |
|
||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||| || | ||||||| || ||||||||||||||||||| |
|
|
| T |
45270409 |
tgaatatgaatactggtattgttatccaggactgcaatatcatcccagaagcagcattggtccctgaaaaattcacagttaggtcttacttgggcagacc |
45270310 |
T |
|
| Q |
135 |
atggaagtatttagcaaagactgtcgtcatggaatccaccattggtgatttcattcattcagatggatggaccatttggcaaggagaacaaa-------- |
226 |
Q |
| |
|
|||| | || | ||||| | ||| ||||||||||||| ||||||||||| |||||| |||||||||||||| ||||| || |||||||| |
|
|
| T |
45270309 |
atggcaaaatgaatcaaaggcagtcatcatggaatccacaattggtgattttattcatcaagatggatggaccacttggccagaagaacaaaacaagcca |
45270210 |
T |
|
| Q |
227 |
----------atcacaacacatgttactatgcagagtatgccaacaccggacctggtgccaatgttgcgaggagggtcaagtggaagggttatcacggtg |
316 |
Q |
| |
|
|| | ||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
45270209 |
gaaaaacatcatgaaaacacgtgttactttgcagagtatgccaacactggacctggtgccaatgttgcgaggagggtcaagtggaagggttataagggtg |
45270110 |
T |
|
| Q |
317 |
tcattagcagggccgaggctaacaaattcacagctggtatatggctccaagctgg------------acccaagtctgcagctgaatggttgaatggtct |
404 |
Q |
| |
|
||||||||||| |||||||| ||||| ||| || ||||||||||| | ||||| |||||||||||||| |||||||||| | | ||| |
|
|
| T |
45270109 |
tcattagcaggagcgaggctaccaaatacaccgccagtatatggctcgatgctggaccgaagactgcacccaagtctgcagttgaatggttgcacgatct |
45270010 |
T |
|
| Q |
405 |
tcatgttcctcactacctttgcttc |
429 |
Q |
| |
|
||||||||||||||||||| ||||| |
|
|
| T |
45270009 |
tcatgttcctcactaccttggcttc |
45269985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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