View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3902_low_5 (Length: 356)
Name: NF3902_low_5
Description: NF3902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3902_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 30 - 338
Target Start/End: Original strand, 7798598 - 7798906
Alignment:
| Q |
30 |
aaaataatagtacataagtaaaatatttaatgagattgttttggctttttatttaggtggggcatttgcactatattcattgctatgtaggcatgccaat |
129 |
Q |
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| T |
7798598 |
aaaataatagtacataagtaaaatatttaatgagattgttttggctttttatttaggtggggcatttgcactatattcattgctatgtaggcatgccaat |
7798697 |
T |
|
| Q |
130 |
gtgagtttgattccaaatcaacaaccagaggacatggagctttctaactacaaattagaaacaccatctagcaaccaacaattgaagaagaagcttgaaa |
229 |
Q |
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| T |
7798698 |
gtgagtttgattccaaatcaacaaccagaggacatggagctttctaactacaaattagaaacaccatctagcaaccaacaattgaagaagaagcttgaaa |
7798797 |
T |
|
| Q |
230 |
atagtcattttgcacgtgttcttcttttatttatgactatattgggaactaccatggttataggtgatggggttttcactccaccaatgtcaggttaagt |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
7798798 |
atagtcattttgcacgtgttcttcttttatttatgactatattgggaactaccatggttataggtgatggggttttcactccaccaatgtcaggttaatt |
7798897 |
T |
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| Q |
330 |
attaacttt |
338 |
Q |
| |
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||||||||| |
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| T |
7798898 |
attaacttt |
7798906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 30 - 338
Target Start/End: Original strand, 7817869 - 7818177
Alignment:
| Q |
30 |
aaaataatagtacataagtaaaatatttaatgagattgttttggctttttatttaggtggggcatttgcactatattcattgctatgtaggcatgccaat |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7817869 |
aaaataatagtacataagtaaaatatttaatgagattgttttggctttttatttaggtggggcatttgcactatattcattgctatgtaggcatgccaat |
7817968 |
T |
|
| Q |
130 |
gtgagtttgattccaaatcaacaaccagaggacatggagctttctaactacaaattagaaacaccatctagcaaccaacaattgaagaagaagcttgaaa |
229 |
Q |
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| T |
7817969 |
gtgagtttgattccaaatcaacaaccagaggacatggagctttctaactacaaattagaaacaccatctagcaaccaacaattgaagaagaagcttgaaa |
7818068 |
T |
|
| Q |
230 |
atagtcattttgcacgtgttcttcttttatttatgactatattgggaactaccatggttataggtgatggggttttcactccaccaatgtcaggttaagt |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
7818069 |
atagtcattttgcacgtgttcttcttttatttatgactatattgggaactaccatggttataggtgatggggttttcactccaccaatgtcaggttaatt |
7818168 |
T |
|
| Q |
330 |
attaacttt |
338 |
Q |
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||||||||| |
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| T |
7818169 |
attaacttt |
7818177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 83 - 201
Target Start/End: Complemental strand, 41131319 - 41131201
Alignment:
| Q |
83 |
taggtggggcatttgcactatattcattgctatgtaggcatgccaatgtgagtttgattccaaatcaacaaccagaggacatggagctttctaactacaa |
182 |
Q |
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||||||| || ||||||||||| || ||| ||||||||||| || |||||||| ||| ||||||||||| || |||||||| || ||||| ||||| |
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| T |
41131319 |
taggtggagcgtttgcactatactcgttgatatgtaggcatataaagatgagtttggctcccaatcaacaacctgaagacatggaactctctaattacaa |
41131220 |
T |
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| Q |
183 |
attagaaacaccatctagc |
201 |
Q |
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| |||||| |||||||||| |
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| T |
41131219 |
actagaaataccatctagc |
41131201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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