View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3903_high_4 (Length: 250)
Name: NF3903_high_4
Description: NF3903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3903_high_4 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 31278578 - 31278335
Alignment:
| Q |
7 |
gtgagatgaatgttgatgtgaatcaattatttatcatatgtgcatttttcgacataatttgatcattggttacaaagtggttaggttttgttatagtaaa |
106 |
Q |
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| T |
31278578 |
gtgaaatgaatgttgatgtggattaattatttattatatgtgcatttttcgacataatttgatcattggttacaaattggttaggttttgttatagtaaa |
31278479 |
T |
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| Q |
107 |
actgggttctagctattacgggtcatcttgcttatttatgttttttaggcggtttctcaaagcagactcatttagctttgaagattttttgacttagttg |
206 |
Q |
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| T |
31278478 |
actaggttctagctattacgggtcatcttgcttatttatgttgtttaggcggtttctcaaagcagattcatttagctttgaagattttctgacttagttg |
31278379 |
T |
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| Q |
207 |
tgcatagatcatttagaaagaaagaaatatgcacattttcagca |
250 |
Q |
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| T |
31278378 |
tgcatatatcatttagaaagaaagaaatatgcacattttcagca |
31278335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 157 - 235
Target Start/End: Complemental strand, 32350046 - 32349968
Alignment:
| Q |
157 |
ggtttctcaaagcagactcatttagctttgaagattttttgacttagttgtgcatagatcatttagaaagaaagaaata |
235 |
Q |
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| T |
32350046 |
ggtttctctaagtagactcatttaactttgaagattttctgacttagtcgtgcataggtcagttggaaagaaagaaata |
32349968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 157 - 235
Target Start/End: Complemental strand, 32366707 - 32366629
Alignment:
| Q |
157 |
ggtttctcaaagcagactcatttagctttgaagattttttgacttagttgtgcatagatcatttagaaagaaagaaata |
235 |
Q |
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| T |
32366707 |
ggtttctctaagtagactcatttaactttgaagattttctgacttagtcgtgcataggtcagttggaaagaaagaaata |
32366629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 32350116 - 32350051
Alignment:
| Q |
44 |
atgtgcatttttcgacataatttgatcattggttacaaagtggttaggttttgttatagtaaaact |
109 |
Q |
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| T |
32350116 |
atgtgcatttttcgacagaatttggtcattggttacaaattcgttaggttttgtaacagtaaaact |
32350051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 32366777 - 32366712
Alignment:
| Q |
44 |
atgtgcatttttcgacataatttgatcattggttacaaagtggttaggttttgttatagtaaaact |
109 |
Q |
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| T |
32366777 |
atgtgcatttttcgacagaatttggtcattggttacaaattcgttaggttttgtaacagtaaaact |
32366712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 235
Target Start/End: Original strand, 197107 - 197204
Alignment:
| Q |
138 |
ttatttatgttttttaggcggtttctcaaagcagactcatttagctttgaagattttttgacttagttgtgcatagatcatttagaaagaaagaaata |
235 |
Q |
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| T |
197107 |
ttatttttgttgtttaggtggtttcttaaagtaggcatgtttaactttgaagattatttggcttagttgtgcataagtcatttggaaagaaagaaata |
197204 |
T |
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