View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3903_low_1 (Length: 641)
Name: NF3903_low_1
Description: NF3903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3903_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 18 - 625
Target Start/End: Original strand, 4857371 - 4857990
Alignment:
| Q |
18 |
aatatccaagttggaatgtttgacatttatctaggtatgtcaatttgtacatgtaagtggggatctccgtagaaactgccccatttaagccctcgttggc |
117 |
Q |
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| T |
4857371 |
aatatccaagttgaaatgtttgacatttatctagggatgtcaatttgtacgtgtaagtggggatctccgtggaaattgccccatttgagccctcgttggc |
4857470 |
T |
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| Q |
118 |
gagaaggctttcctcacgaggacgagaacgaaagttcaccaactccatagagaccctacctctgaa------------ataacttataaatgttatattt |
205 |
Q |
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| T |
4857471 |
gagaaggctttcctcacgaggacgagaacgaaagttcaccaactccatagagaccctacctctaaacagtttactaaaataacttatagatgttatattt |
4857570 |
T |
|
| Q |
206 |
atttgtctttccacacaataagtgtatagatttcttttatatgtnnnnnnntttatttgcacaatactcataatattgtcttgctttttattttcttgta |
305 |
Q |
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| T |
4857571 |
atttgtctttccacacaataattgtatagatttcttttatatgtaaaaaattttgtttgcacaatactcataatattgtcttgctttttattttctttta |
4857670 |
T |
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| Q |
306 |
tagttaaaatatgtttgctatcaatggtattgacaataataggttttgttatgaatccccccgcaaggaccgtggaaatcgggggtttcggggtcggaaa |
405 |
Q |
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| T |
4857671 |
tagttaaaatatttttactatcaattttattgacaataataggtttttttatgaatcccct-gcaaggaccgtggaaatcgggggtttcggggtcggaaa |
4857769 |
T |
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| Q |
406 |
caggaagaaaatactcctcaaaatagggaatggagacgtggatggagaaaattctggacggcggggatggggagtacc-tactccggcgccgtttacata |
504 |
Q |
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| T |
4857770 |
caggaagaaaatactcctcaaaatagggaatggagacgtggatggagaaaattttggactgcggggatggggagtaccctactccggcgccgtttacata |
4857869 |
T |
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| Q |
505 |
cctagtttatctaagtttatttatgctgatgtttgcttgttttcttctggttgacagatatcaggtctacttgtgtgatgttggattcatggaatttgaa |
604 |
Q |
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| T |
4857870 |
cctagtttatctaagtttatttatgctgatgtttgcttgttttcttctggttgacagatatcaggtctacttgtgtgatgttggattcatagaattttaa |
4857969 |
T |
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| Q |
605 |
ttcaaattcacctctgttttg |
625 |
Q |
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| T |
4857970 |
ttcaaattcacctctgttttg |
4857990 |
T |
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