View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3903_low_2 (Length: 362)
Name: NF3903_low_2
Description: NF3903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3903_low_2 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 11 - 362
Target Start/End: Original strand, 40653541 - 40653892
Alignment:
| Q |
11 |
cacagacaaggtatgactcgatcttccttttattactttgacaagagagaaaaatatggaaaggaatggaattggatttctgcacaaaaagcatgcataa |
110 |
Q |
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| T |
40653541 |
cacagacaaggtatgactcgatcttccttttattactttgacaagagagaaaaatatggaaaggaatggaattggatttctgcacaaaaagcatgcataa |
40653640 |
T |
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| Q |
111 |
ctggctgtcctattttttgtggttaaaggatatattaacaagagttattgcgcgtgaagttaatcttgaagacacaccttgttccaaggttatgacaagg |
210 |
Q |
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| T |
40653641 |
ctggctgtcctattttttgtggttaaaggatatattaacaagagttattgcgcgtgaagttaatcttgaagacacaccttgttccaaggttatgacaagg |
40653740 |
T |
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| Q |
211 |
aatccagtattcgtccttaccgacactcttgccgtcgaagcgctccaaaagatggtgcaaggttggtcatacatgtcacaatgtttatcattacttcatg |
310 |
Q |
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| T |
40653741 |
aatccagtattcgtccttaccgacactcttgccgtcgaagcactccaaaagatggtgcaaggttggtcatacatgtcacaatgtttatcattacttcatg |
40653840 |
T |
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| Q |
311 |
ctatatgctatttgcctgttacattatgctgtcgtgccttctgaagacaagg |
362 |
Q |
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| T |
40653841 |
ctatatgctatttgcctgttacattatgccgtcgtgccttctgaagacaagg |
40653892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 170 - 277
Target Start/End: Original strand, 45428152 - 45428259
Alignment:
| Q |
170 |
ttaatcttgaagacacaccttgttccaaggttatgacaaggaatccagtattcgtccttaccgacactcttgccgtcgaagcgctccaaaagatggtgca |
269 |
Q |
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| T |
45428152 |
ttaatcctgaagacacgcctgtttccaaggttatgacaagaaatccggtatttgtcctttctgaaactcttgctgtggaagccctccaaaagatggtgca |
45428251 |
T |
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| Q |
270 |
aggttggt |
277 |
Q |
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| T |
45428252 |
aggttggt |
45428259 |
T |
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