View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3904_high_10 (Length: 420)
Name: NF3904_high_10
Description: NF3904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3904_high_10 |
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| [»] scaffold0009 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 19 - 411
Target Start/End: Complemental strand, 7123738 - 7123346
Alignment:
| Q |
19 |
tgtgtcgggtgccttactcaattcattcgcccagaacattgcgatgcttatcattggaaggttgttacttggttttggtattggatgtgccaatcagtcg |
118 |
Q |
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| T |
7123738 |
tgtgtcgggtgccttactcaattcattcgcccagaacattgcgatgcttatcattggaaggttgttacttggttttggtattggatgtgccaatcagtcg |
7123639 |
T |
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| Q |
119 |
gttccaatctatatctcagaaatggcaccttctcaatatagaggagccttaaacatgtgttttcaattttcgattactattggtatgtttgcagccaatc |
218 |
Q |
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| T |
7123638 |
gttccaatctatatctcagaaatggcaccttctcaatatagaggagccttaaacatgtgttttcaattttcgattactattggtatgtttgcagccaatc |
7123539 |
T |
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| Q |
219 |
tggcaaactattactgtgccaagttatggaatggtgagggatggcgattaagcttggggctaggtgcggtacctgcggtgattttcgttgtaggcacact |
318 |
Q |
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| T |
7123538 |
tggcaaactattactgtgccaagttatggaatggtgagggatggcgattaagcttggggctaggtgcggtacctgcggtgattttcgttgtaggcacact |
7123439 |
T |
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| Q |
319 |
ttttcttcctgattcaccaagctcacttgtttcacgcggtcgccatgaagccgcaagaaaggagcttgcaaaaattcgcggtactgatgatgt |
411 |
Q |
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| T |
7123438 |
ttttcttcctgattcaccaagctcacttgtttcacgcggtcgccatgaagccgcaagaaaggagcttgcaaaaattcgcggtactgatgatgt |
7123346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 119 - 411
Target Start/End: Complemental strand, 187460 - 187168
Alignment:
| Q |
119 |
gttccaatctatatctcagaaatggcaccttctcaatatagaggagccttaaacatgtgttttcaattttcgattactattggtatgtttgcagccaatc |
218 |
Q |
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| T |
187460 |
gttccaatctatctatcagaaatggcaccttataaatacaggggtgctctaaacatgtgttttcaattgtcaattaccattggtatttttacagccaata |
187361 |
T |
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| Q |
219 |
tggcaaactattactgtgccaagttatggaatggtgagggatggcgattaagcttggggctaggtgcggtacctgcggtgattttcgttgtaggcacact |
318 |
Q |
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| T |
187360 |
tgttcaactattacttttccaagatactaaatggtgagggatggcgattaagtttggggctaggtgcggtacctgcagtggttttcattataggctcaat |
187261 |
T |
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| Q |
319 |
ttttcttcctgattcaccaagctcacttgtttcacgcggtcgccatgaagccgcaagaaaggagcttgcaaaaattcgcggtactgatgatgt |
411 |
Q |
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| T |
187260 |
ttgtcttcctgattcgccaaactcgcttgttacacgtggtcgtcacgaagaagcaagaaaggagcttgtgaaaatccgcggtactgatgatgt |
187168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 187719 - 187623
Alignment:
| Q |
19 |
tgtgtcgggtgccttactcaattcattcgcccagaacattgcgatgcttatcattggaaggttgttacttggttttggtattggatgtgccaatcag |
115 |
Q |
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| T |
187719 |
tgtgtcgggcgcattactcaatggattagccatgaacattgcgatgcttatcgctggaaggttgttgcttggttttggtattgggtgtgccaatcag |
187623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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