View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3904_high_16 (Length: 268)

Name: NF3904_high_16
Description: NF3904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3904_high_16
NF3904_high_16
[»] chr4 (10 HSPs)
chr4 (1-200)||(50246366-50246565)
chr4 (200-252)||(17272005-17272057)
chr4 (205-252)||(29584363-29584410)
chr4 (205-252)||(35021200-35021247)
chr4 (205-252)||(38812262-38812309)
chr4 (205-252)||(54995801-54995848)
chr4 (205-251)||(32579443-32579489)
chr4 (206-251)||(28003152-28003197)
chr4 (208-252)||(20097493-20097537)
chr4 (208-252)||(27396618-27396662)
[»] scaffold0262 (1 HSPs)
scaffold0262 (206-252)||(12140-12186)
[»] chr3 (9 HSPs)
chr3 (205-252)||(35844316-35844363)
chr3 (205-252)||(40640636-40640683)
chr3 (205-252)||(42665543-42665590)
chr3 (203-252)||(7327622-7327671)
chr3 (207-252)||(19606916-19606961)
chr3 (203-252)||(45879500-45879549)
chr3 (204-252)||(11466813-11466861)
chr3 (204-252)||(44186640-44186688)
chr3 (208-252)||(46297901-46297945)
[»] chr2 (7 HSPs)
chr2 (206-252)||(33902068-33902114)
chr2 (206-252)||(4763628-4763674)
chr2 (206-252)||(31861895-31861941)
chr2 (206-252)||(41465509-41465555)
chr2 (204-252)||(4264234-4264282)
chr2 (205-249)||(31570894-31570938)
chr2 (208-252)||(41643874-41643918)
[»] chr1 (8 HSPs)
chr1 (205-251)||(4150490-4150536)
chr1 (204-252)||(13876921-13876969)
chr1 (205-252)||(1547282-1547329)
chr1 (211-252)||(27533114-27533155)
chr1 (199-252)||(30254413-30254466)
chr1 (199-252)||(30254847-30254900)
chr1 (205-241)||(421387-421423)
chr1 (204-252)||(2959742-2959790)
[»] chr5 (8 HSPs)
chr5 (207-252)||(22980794-22980839)
chr5 (205-252)||(8466744-8466791)
chr5 (205-252)||(8742016-8742063)
chr5 (205-252)||(22616493-22616540)
chr5 (205-252)||(27330305-27330352)
chr5 (206-252)||(15724490-15724536)
chr5 (206-252)||(26317813-26317859)
chr5 (200-252)||(25501055-25501107)
[»] chr8 (7 HSPs)
chr8 (203-251)||(1835392-1835440)
chr8 (203-251)||(1879233-1879281)
chr8 (208-251)||(6446709-6446752)
chr8 (206-252)||(28220957-28221003)
chr8 (206-252)||(41362517-41362563)
chr8 (206-243)||(1954108-1954145)
chr8 (206-251)||(33906223-33906268)
[»] chr7 (4 HSPs)
chr7 (208-252)||(3953733-3953777)
chr7 (205-252)||(40381939-40381986)
chr7 (206-246)||(10359360-10359400)
chr7 (208-252)||(27421519-27421563)
[»] chr6 (7 HSPs)
chr6 (208-252)||(30338478-30338522)
chr6 (205-252)||(8513232-8513279)
chr6 (206-251)||(7235173-7235218)
chr6 (204-252)||(3880077-3880125)
chr6 (207-251)||(20768087-20768131)
chr6 (203-251)||(25440955-25441003)
chr6 (208-252)||(30353496-30353540)
[»] scaffold0312 (1 HSPs)
scaffold0312 (205-251)||(9138-9184)
[»] scaffold0002 (1 HSPs)
scaffold0002 (203-252)||(131-180)


Alignment Details
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 50246565 - 50246366
Alignment:
Q  1 atctagatgtttctttatataaaatcatagattattagtccgcagccgcgcaagttgcatgagaaagatacttgtcaactgagataattcannnnnnnna 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||        |    
T  50246565 atctagatgtttctttatataaaatcatagattattagtccgcagccgcgcaagttgcatgtgaaagatacttgtcaactgagataattcatttttttta 50246466  T
Q  101 tagggtcgtgaacgtgaagtatcatgcatcatccaggggaagccgcgtattattttcgtgtaaagttgttaagtatccaacttttttcttcttcttgcat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  50246465 tagggtcgtgaacgtgaagtatcatgcatcatccaggggaagccgcgtattattttcgtgtaaagttgttaagtatccaactcttttcttcttcttgcat 50246366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 17272005 - 17272057
Alignment:
Q  200 ttattaggaaaattctatgatgaagttgtgataatgacttttctggtgaagtt 252  Q
    |||| |||||||||||||| |||||| |||  |||||||||||||||||||||    
T  17272005 ttataaggaaaattctatggtgaagtcgtgggaatgacttttctggtgaagtt 17272057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 252
Target Start/End: Complemental strand, 29584410 - 29584363
Alignment:
Q  205 aggaaaattctatgatgaagttgtgataatgacttttctggtgaagtt 252  Q
    |||||||||||||| |||||| |||  |||||||||||||||||||||    
T  29584410 aggaaaattctatggtgaagtcgtgggaatgacttttctggtgaagtt 29584363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 252
Target Start/End: Complemental strand, 35021247 - 35021200
Alignment:
Q  205 aggaaaattctatgatgaagttgtgataatgacttttctggtgaagtt 252  Q
    |||||||||||||| ||||||  ||| |||||||||||||||||||||    
T  35021247 aggaaaattctatggtgaagtcatgaaaatgacttttctggtgaagtt 35021200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 252
Target Start/End: Complemental strand, 38812309 - 38812262
Alignment:
Q  205 aggaaaattctatgatgaagttgtgataatgacttttctggtgaagtt 252  Q
    |||||||||||||| ||||||  ||| |||||||||||||||||||||    
T  38812309 aggaaaattctatggtgaagtcatgagaatgacttttctggtgaagtt 38812262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 252
Target Start/End: Complemental strand, 54995848 - 54995801
Alignment:
Q  205 aggaaaattctatgatgaagttgtgataatgacttttctggtgaagtt 252  Q
    |||||||||||| ||||||||  |||||||||||||| ||||||||||    
T  54995848 aggaaaattctacgatgaagtcatgataatgacttttttggtgaagtt 54995801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 251
Target Start/End: Original strand, 32579443 - 32579489
Alignment:
Q  205 aggaaaattctatgatgaagttgtgataatgacttttctggtgaagt 251  Q
    ||||||||| |||| ||||||| ||| ||||||||||||||||||||    
T  32579443 aggaaaattttatggtgaagttctgagaatgacttttctggtgaagt 32579489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 251
Target Start/End: Complemental strand, 28003197 - 28003152
Alignment:
Q  206 ggaaaattctatgatgaagttgtgataatgacttttctggtgaagt 251  Q
    ||||||||||||| ||||||  ||| ||||||||||||||||||||    
T  28003197 ggaaaattctatggtgaagtcatgagaatgacttttctggtgaagt 28003152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 20097537 - 20097493
Alignment:
Q  208 aaaattctatgatgaagttgtgataatgacttttctggtgaagtt 252  Q
    ||||||||||| ||||||  ||| |||||||||||||||||||||    
T  20097537 aaaattctatggtgaagtcatgagaatgacttttctggtgaagtt 20097493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 252
Target Start/End: Original strand, 27396618 - 27396662
Alignment:
Q  208 aaaattctatgatgaagttgtgataatgacttttctggtgaagtt 252  Q
    ||||||||||| ||||||  ||| |||||||||||||||||||||    
T  27396618 aaaattctatggtgaagtcatgagaatgacttttctggtgaagtt 27396662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 12186 - 12140
Alignment:
Q  206 ggaaaattctatgatgaagttgtgataatgacttttctggtgaagtt 252  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||    
T  12186 ggaaaattctatgatgaagttatgagaatgacttttctggtgaagtt 12140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 252
Target Start/End: Original strand, 35844316 - 35844363
Alignment:
Q  205 aggaaaattctatgatgaagttgtgataatgacttttctggtgaagtt 252  Q
    |||||||||||||| ||||||  |||||||||||||||||||||||||    
T  35844316 aggaaaattctatggtgaagtcatgataatgacttttctggtgaagtt 35844363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 252
Target Start/End: Complemental strand, 40640683 - 40640636
Alignment:
Q  205 aggaaaattctatgatgaagttgtgataatgacttttctggtgaagtt 252  Q
    |||||||||||||| ||||||  ||| |||||||||||||||||||||    
T  40640683 aggaaaattctatggtgaagtcatgagaatgacttttctggtgaagtt 40640636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 252
Target Start/End: Complemental strand, 42665590 - 42665543
Alignment:
Q  205 aggaaaattctatgatgaagttgtgataatgacttttctggtgaagtt 252  Q
    |||||||||||||| ||||||| ||||||||| |||| ||||||||||    
T  42665590 aggaaaattctatggtgaagttatgataatgatttttttggtgaagtt 42665543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 252
Target Start/End: Complemental strand, 7327671 - 7327622
Alignment:
Q  203 ttaggaaaattctatgatgaagttgtgataatgacttttctggtgaagtt 252  Q
    |||||||||||||||| ||||||| ||| |||||||||| | ||||||||    
T  7327671 ttaggaaaattctatggtgaagttatgagaatgacttttttagtgaagtt 7327622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 252
Target Start/End: Complemental strand, 19606961 - 19606916
Alignment:
Q  207 gaaaattctatgatgaagttgtgataatgacttttctggtgaagtt 252  Q
    |||||||||||| ||||||| | | |||||||||||||||||||||    
T  19606961 gaaaattctatggtgaagttataaaaatgacttttctggtgaagtt 19606916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 252
Target Start/End: Complemental strand, 45879549 - 45879500
Alignment:
Q  203 ttaggaaaattctatgatgaagttgtgataatgacttttctggtgaagtt 252  Q
    |||||||||||||||| ||||||  ||| ||||||||||||||| |||||    
T  45879549 ttaggaaaattctatgctgaagtcatgagaatgacttttctggtaaagtt 45879500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 11466813 - 11466861
Alignment:
Q  204 taggaaaattctatgatgaagttgtgataatgacttttctggtgaagtt 252  Q
    ||||||||||||||| ||||||  ||| ||||||||||||| |||||||    
T  11466813 taggaaaattctatggtgaagtcttgagaatgacttttctgatgaagtt 11466861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 44186688 - 44186640
Alignment:
Q  204 taggaaaattctatgatgaagttgtgataatgacttttctggtgaagtt 252  Q
    |||||||||||||||||||||| | || ||||| |||| ||||||||||    
T  44186688 taggaaaattctatgatgaagtcgagagaatgatttttttggtgaagtt 44186640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 46297945 - 46297901
Alignment:
Q  208 aaaattctatgatgaagttgtgataatgacttttctggtgaagtt 252  Q
    ||||||||||| ||||||  ||| |||||||||||||||||||||    
T  46297945 aaaattctatggtgaagtcatgaaaatgacttttctggtgaagtt 46297901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 252
Target Start/End: Original strand, 33902068 - 33902114
Alignment:
Q  206 ggaaaattctatgatgaagttgtgataatgacttttctggtgaagtt 252  Q
    |||||||||||||||||||| || | |||||||||||||||||||||    
T  33902068 ggaaaattctatgatgaagtcgttagaatgacttttctggtgaagtt 33902114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 252
Target Start/End: Original strand, 4763628 - 4763674
Alignment:
Q  206 ggaaaattctatgatgaagttgtgataatgacttttctggtgaagtt 252  Q
    ||||||||||||||||||||  ||| ||||||||||||| |||||||    
T  4763628 ggaaaattctatgatgaagtcatgaaaatgacttttctgatgaagtt 4763674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 252
Target Start/End: Original strand, 31861895 - 31861941
Alignment:
Q  206 ggaaaattctatgatgaagttgtgataatgacttttctggtgaagtt 252  Q
    ||||||||||||| ||||||| ||| |||||||||| ||||||||||    
T  31861895 ggaaaattctatggtgaagttatgagaatgacttttttggtgaagtt 31861941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 252
Target Start/End: Original strand, 41465509 - 41465555
Alignment:
Q  206 ggaaaattctatgatgaagttgtgataatgacttttctggtgaagtt 252  Q
    ||||||||||||| ||||||  ||| |||||||||||||||||||||    
T  41465509 ggaaaattctatggtgaagtcatgagaatgacttttctggtgaagtt 41465555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 4264282 - 4264234
Alignment:
Q  204 taggaaaattctatgatgaagttgtgataatgacttttctggtgaagtt 252  Q
    ||||||||||||||| ||||||  | ||||||||||||||||| |||||    
T  4264282 taggaaaattctatggtgaagtcatcataatgacttttctggtaaagtt 4264234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 31570938 - 31570894
Alignment:
Q  205 aggaaaattctatgatgaagttgtgataatgacttttctggtgaa 249  Q
    |||||||||||||| ||||||| ||| ||| ||||||||||||||    
T  31570938 aggaaaattctatggtgaagttatgagaataacttttctggtgaa 31570894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 252
Target Start/End: Original strand, 41643874 - 41643918
Alignment:
Q  208 aaaattctatgatgaagttgtgataatgacttttctggtgaagtt 252  Q
    ||||||||||| ||||||  |||||||||||||| ||||||||||    
T  41643874 aaaattctatggtgaagtcatgataatgacttttttggtgaagtt 41643918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 205 - 251
Target Start/End: Complemental strand, 4150536 - 4150490
Alignment:
Q  205 aggaaaattctatgatgaagttgtgataatgacttttctggtgaagt 251  Q
    |||||||||||||| ||||||  ||||||||||||||||||||||||    
T  4150536 aggaaaattctatggtgaagtcatgataatgacttttctggtgaagt 4150490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 13876969 - 13876921
Alignment:
Q  204 taggaaaattctatgatgaagttgtgataatgacttttctggtgaagtt 252  Q
    ||||||||||||||| ||||||| ||| |||||||||| ||||||||||    
T  13876969 taggaaaattctatggtgaagttatgaaaatgacttttatggtgaagtt 13876921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 252
Target Start/End: Original strand, 1547282 - 1547329
Alignment:
Q  205 aggaaaattctatgatgaagttgtgataatgacttttctggtgaagtt 252  Q
    |||||||||||||| ||||||  ||| |||||||||||||||||||||    
T  1547282 aggaaaattctatggtgaagtcatgagaatgacttttctggtgaagtt 1547329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 252
Target Start/End: Complemental strand, 27533155 - 27533114
Alignment:
Q  211 attctatgatgaagttgtgataatgacttttctggtgaagtt 252  Q
    |||||||||| ||||| ||| |||||||||||||||||||||    
T  27533155 attctatgataaagttatgagaatgacttttctggtgaagtt 27533114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 252
Target Start/End: Original strand, 30254413 - 30254466
Alignment:
Q  199 attattaggaaaattctatgatgaagttgtgataatgacttttctggtgaagtt 252  Q
    |||||||||||||||||||| ||||||| | | |||||||||| || |||||||    
T  30254413 attattaggaaaattctatggtgaagttataagaatgacttttttgttgaagtt 30254466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 252
Target Start/End: Original strand, 30254847 - 30254900
Alignment:
Q  199 attattaggaaaattctatgatgaagttgtgataatgacttttctggtgaagtt 252  Q
    |||||||||||||||||||| ||||||  | |||||||||||| || |||||||    
T  30254847 attattaggaaaattctatggtgaagtcataataatgacttttttgatgaagtt 30254900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 421387 - 421423
Alignment:
Q  205 aggaaaattctatgatgaagttgtgataatgactttt 241  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  421387 aggaaaattctatgatgaagttatgagaatgactttt 421423  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 2959742 - 2959790
Alignment:
Q  204 taggaaaattctatgatgaagttgtgataatgacttttctggtgaagtt 252  Q
    ||||||||||||||| ||||||  ||| ||||||||||||| |||||||    
T  2959742 taggaaaattctatggtgaagtcatgaaaatgacttttctgatgaagtt 2959790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 252
Target Start/End: Original strand, 22980794 - 22980839
Alignment:
Q  207 gaaaattctatgatgaagttgtgataatgacttttctggtgaagtt 252  Q
    ||||||| |||||||||||| ||| |||||||||||||||||||||    
T  22980794 gaaaattttatgatgaagttatgagaatgacttttctggtgaagtt 22980839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 252
Target Start/End: Original strand, 8466744 - 8466791
Alignment:
Q  205 aggaaaattctatgatgaagttgtgataatgacttttctggtgaagtt 252  Q
    |||||||||||||||||| ||  ||| |||||||||||||||||||||    
T  8466744 aggaaaattctatgatgaggtcatgagaatgacttttctggtgaagtt 8466791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 252
Target Start/End: Complemental strand, 8742063 - 8742016
Alignment:
Q  205 aggaaaattctatgatgaagttgtgataatgacttttctggtgaagtt 252  Q
    |||||||||||||| ||||||  ||| |||||||||||||||||||||    
T  8742063 aggaaaattctatggtgaagtcatgagaatgacttttctggtgaagtt 8742016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 252
Target Start/End: Original strand, 22616493 - 22616540
Alignment:
Q  205 aggaaaattctatgatgaagttgtgataatgacttttctggtgaagtt 252  Q
    |||||||||||||| ||||||  ||| |||||||||||||||||||||    
T  22616493 aggaaaattctatggtgaagtcatgaaaatgacttttctggtgaagtt 22616540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 252
Target Start/End: Original strand, 27330305 - 27330352
Alignment:
Q  205 aggaaaattctatgatgaagttgtgataatgacttttctggtgaagtt 252  Q
    |||||||||||||| |||||| |||  |||||||||||||||||||||    
T  27330305 aggaaaattctatggtgaagtcgtgggaatgacttttctggtgaagtt 27330352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 252
Target Start/End: Original strand, 15724490 - 15724536
Alignment:
Q  206 ggaaaattctatgatgaagttgtgataatgacttttctggtgaagtt 252  Q
    ||||||||||||| ||||||| ||| |||||||||| ||||||||||    
T  15724490 ggaaaattctatggtgaagttatgagaatgacttttttggtgaagtt 15724536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 26317859 - 26317813
Alignment:
Q  206 ggaaaattctatgatgaagttgtgataatgacttttctggtgaagtt 252  Q
    ||||||||||||||||||||  ||| |||||||||| ||||||||||    
T  26317859 ggaaaattctatgatgaagtcatgaaaatgacttttttggtgaagtt 26317813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 252
Target Start/End: Complemental strand, 25501107 - 25501055
Alignment:
Q  200 ttattaggaaaattctatgatgaagttgtgataatgacttttctggtgaagtt 252  Q
    ||||||| ||||||||||| ||||||  ||| ||||||||||||||| |||||    
T  25501107 ttattagaaaaattctatggtgaagtcatgagaatgacttttctggtaaagtt 25501055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 1835440 - 1835392
Alignment:
Q  203 ttaggaaaattctatgatgaagttgtgataatgacttttctggtgaagt 251  Q
    |||||||||||||||| ||||||||| | |||||||||| |||||||||    
T  1835440 ttaggaaaattctatggtgaagttgttagaatgacttttttggtgaagt 1835392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 1879281 - 1879233
Alignment:
Q  203 ttaggaaaattctatgatgaagttgtgataatgacttttctggtgaagt 251  Q
    |||||||||||||||| ||||||||| | |||||||||| |||||||||    
T  1879281 ttaggaaaattctatggtgaagttgttagaatgacttttttggtgaagt 1879233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 251
Target Start/End: Complemental strand, 6446752 - 6446709
Alignment:
Q  208 aaaattctatgatgaagttgtgataatgacttttctggtgaagt 251  Q
    ||||||||||| ||||||  ||||||||||||||||||||||||    
T  6446752 aaaattctatggtgaagtcatgataatgacttttctggtgaagt 6446709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 28221003 - 28220957
Alignment:
Q  206 ggaaaattctatgatgaagttgtgataatgacttttctggtgaagtt 252  Q
    ||||||||||||||| ||||  ||| |||||||||||||||||||||    
T  28221003 ggaaaattctatgataaagtcatgaaaatgacttttctggtgaagtt 28220957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 252
Target Start/End: Original strand, 41362517 - 41362563
Alignment:
Q  206 ggaaaattctatgatgaagttgtgataatgacttttctggtgaagtt 252  Q
    ||||||||||||| ||||||| ||| |||||||||| ||||||||||    
T  41362517 ggaaaattctatggtgaagttatgaaaatgacttttttggtgaagtt 41362563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 243
Target Start/End: Complemental strand, 1954145 - 1954108
Alignment:
Q  206 ggaaaattctatgatgaagttgtgataatgacttttct 243  Q
    ||||||||||||| ||||||| ||||||||||||||||    
T  1954145 ggaaaattctatggtgaagttatgataatgacttttct 1954108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 33906223 - 33906268
Alignment:
Q  206 ggaaaattctatgatgaagttgtgataatgacttttctggtgaagt 251  Q
    ||||||||||||| |||| || ||| ||||||||||||||||||||    
T  33906223 ggaaaattctatggtgaaattatgagaatgacttttctggtgaagt 33906268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 252
Target Start/End: Original strand, 3953733 - 3953777
Alignment:
Q  208 aaaattctatgatgaagttgtgataatgacttttctggtgaagtt 252  Q
    ||||||||||||||||||  ||| |||||||||||||||||||||    
T  3953733 aaaattctatgatgaagtcatgagaatgacttttctggtgaagtt 3953777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 252
Target Start/End: Original strand, 40381939 - 40381986
Alignment:
Q  205 aggaaaattctatgatgaagttgtgataatgacttttctggtgaagtt 252  Q
    |||||||||||| | ||||||| ||| |||||||||||||||||||||    
T  40381939 aggaaaattctacggtgaagttatgagaatgacttttctggtgaagtt 40381986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 246
Target Start/End: Complemental strand, 10359400 - 10359360
Alignment:
Q  206 ggaaaattctatgatgaagttgtgataatgacttttctggt 246  Q
    ||||||||||||| ||||||  |||||||||||||||||||    
T  10359400 ggaaaattctatggtgaagtcatgataatgacttttctggt 10359360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 27421563 - 27421519
Alignment:
Q  208 aaaattctatgatgaagttgtgataatgacttttctggtgaagtt 252  Q
    ||||||||||| |||||| |||||||||| |||| ||||||||||    
T  27421563 aaaattctatggtgaagtcgtgataatgatttttttggtgaagtt 27421519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 252
Target Start/End: Original strand, 30338478 - 30338522
Alignment:
Q  208 aaaattctatgatgaagttgtgataatgacttttctggtgaagtt 252  Q
    ||||||||||||||||||||||| |||||||||| | ||||||||    
T  30338478 aaaattctatgatgaagttgtgagaatgacttttttagtgaagtt 30338522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 252
Target Start/End: Original strand, 8513232 - 8513279
Alignment:
Q  205 aggaaaattctatgatgaagttgtgataatgacttttctggtgaagtt 252  Q
    |||||||||||||| ||||||  ||| |||||||||||||||||||||    
T  8513232 aggaaaattctatggtgaagtcatgagaatgacttttctggtgaagtt 8513279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 251
Target Start/End: Complemental strand, 7235218 - 7235173
Alignment:
Q  206 ggaaaattctatgatgaagttgtgataatgacttttctggtgaagt 251  Q
    ||||||||||||| ||||||| ||| ||||||||||| ||||||||    
T  7235218 ggaaaattctatggtgaagttatgagaatgacttttccggtgaagt 7235173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 3880125 - 3880077
Alignment:
Q  204 taggaaaattctatgatgaagttgtgataatgacttttctggtgaagtt 252  Q
    ||||||||||||||| ||||||   || |||||||||||||||||||||    
T  3880125 taggaaaattctatggtgaagtcacgagaatgacttttctggtgaagtt 3880077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 20768087 - 20768131
Alignment:
Q  207 gaaaattctatgatgaagttgtgataatgacttttctggtgaagt 251  Q
    |||||||||||| ||||||  ||| ||||||||||||||||||||    
T  20768087 gaaaattctatggtgaagtcatgagaatgacttttctggtgaagt 20768131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 25440955 - 25441003
Alignment:
Q  203 ttaggaaaattctatgatgaagttgtgataatgacttttctggtgaagt 251  Q
    ||||| |||||||||| |||||| || | ||||||||||||||||||||    
T  25440955 ttagggaaattctatggtgaagtcgttaaaatgacttttctggtgaagt 25441003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 30353540 - 30353496
Alignment:
Q  208 aaaattctatgatgaagttgtgataatgacttttctggtgaagtt 252  Q
    ||||||||||| ||||||  ||| |||||||||||||||||||||    
T  30353540 aaaattctatggtgaagtcatgagaatgacttttctggtgaagtt 30353496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 251
Target Start/End: Complemental strand, 9184 - 9138
Alignment:
Q  205 aggaaaattctatgatgaagttgtgataatgacttttctggtgaagt 251  Q
    |||||||||||||||||||||| ||| |||||||||| || ||||||    
T  9184 aggaaaattctatgatgaagttatgagaatgacttttttgctgaagt 9138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 252
Target Start/End: Original strand, 131 - 180
Alignment:
Q  203 ttaggaaaattctatgatgaagttgtgataatgacttttctggtgaagtt 252  Q
    |||||||||||||||| ||||||   || |||||||||||||||||||||    
T  131 ttaggaaaattctatggtgaagtcacgaaaatgacttttctggtgaagtt 180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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