View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3904_high_5 (Length: 506)
Name: NF3904_high_5
Description: NF3904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3904_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 458; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 1 - 491
Target Start/End: Original strand, 42093085 - 42093575
Alignment:
| Q |
1 |
catgtgggtggggatggaagaccaggtgggcaaatgctaaggcatttctttgacgattggccacgatcactgcaagactctgacaatgctgaaaacaatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42093085 |
catgtgggtggggatggaagaccaggtgggcaaatgctaaggcatttctttgacgattggccacgatcactgcaagactctgacaatgctgaaaacaatg |
42093184 |
T |
|
| Q |
101 |
gtgggtcatcctccacatgtctctcaatttcaatgccaggaaataacaacacttcttcttcttc---agatgtgtcattgaaattgtccactggctatgg |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
42093185 |
gtgggtcatcctccacatgtctctcaatttcaatgccaggaaataacaacacttcttcttcttcttcagatgtgtcattgaaattgtccactggctatgg |
42093284 |
T |
|
| Q |
198 |
agaagaaccatgtccaagaaatgagaatgtgggcctagtacaaactgagcagcaacaacaacaacaacttcaattgaattggatcggaggatggaattca |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42093285 |
agaagaaccatgtccaagaaatgagaatgtgggcctagtacaaactgagcagcaac---aacaacaacttcaattgaattggatcggaggatggaattca |
42093381 |
T |
|
| Q |
298 |
ggtaatcaagtgtcttcaatgggaggaccacttgctgaggcacttagatcatctacttcaacttcttcacctactagtgttttacatcaattgccacgtt |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42093382 |
ggtaatcaagtgtcttcaatgggaggaccacttgctgaggcacttagatcatctacttcaacttcttcacctactagtgttttacatcaattgccacgtt |
42093481 |
T |
|
| Q |
398 |
gttctggttctgaaaccagctacattagcacctaagtttagtaattggtgctttaattaacttttgttgttttgggggttagtttccacttttg |
491 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
42093482 |
gttctggttctcaaaccagctacattagcacctaagtttagtaattggtgctttaattaacttgtgttgttttgggggttagtttccacttttg |
42093575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 462 - 491
Target Start/End: Original strand, 38946694 - 38946723
Alignment:
| Q |
462 |
tgttgttttgggggttagtttccacttttg |
491 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
38946694 |
tgttgttttgggggttagtttccacttttg |
38946723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University