View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3904_low_1 (Length: 789)
Name: NF3904_low_1
Description: NF3904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3904_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 473; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 297 - 777
Target Start/End: Complemental strand, 32320749 - 32320269
Alignment:
| Q |
297 |
gctttcagccaatgacattgacaaatcattgccgacgtgagttgagtggttatcgctgtccaaacaatttattttgacatcattttgcattgtggtgtac |
396 |
Q |
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| T |
32320749 |
gctttcagccaatgacattgacaaatcattgccgacgtgagttgagtggttatcgctgtccaaacaatttattttgacatcattttgcattatggtgtac |
32320650 |
T |
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| Q |
397 |
tagtatgaattgtggtaagtgtacattgttactagcttgtcgttaccttgccctttgcagtgtgttttactatatcatgaaagcacttgtgtccattacc |
496 |
Q |
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| T |
32320649 |
tagtatgaattgtggtaagtgtacattgttactagcttgtcgttaccttgccctttgcagtgtgttttactatatcatgaaagcacttgtgtccattacc |
32320550 |
T |
|
| Q |
497 |
atgagacaaaattgtgtaatatgatcatgctcctgaagacagctgaggagtgtttatagcatagtactaaataattaacaagtgtttcaaaaaatgtttg |
596 |
Q |
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| T |
32320549 |
atgagacaaaattgtgtaatatgatcatgctcctgaagacagctgaggagtgtttatagcatagtactaaataattaacaagtgtttcaaaaaatgtttg |
32320450 |
T |
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| Q |
597 |
tgtttgcaatcaagaatggtcaagtctcagcaataattcaatacaattattcacaattttaatgatcacaagctgccatttgaaaccttgatactattga |
696 |
Q |
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| T |
32320449 |
tgtttgcaatcaagaatggtcaagtctcagcaataattcaatacaattattcacaatttcaatgatcacaagctgccatttgaaaccttgatactattga |
32320350 |
T |
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| Q |
697 |
tagtgttgtgccacttatgtatgtttgctcaatcaggaggaacaatttgtacacactaattgaaggtagttatgatgatga |
777 |
Q |
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| T |
32320349 |
tagtgttgtgccacttatgtatgtttgctcaatcaggaggaacaatttgtacacactaattgaaggtagttatgatgatga |
32320269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 165; E-Value: 8e-88
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 32320957 - 32320753
Alignment:
| Q |
19 |
tatgggacttgacaaaacaagttgcaagaatgggacaaaaataagtagcaagaggttagacaaaaatagaaatttttgtctctcactaagacaatttttt |
118 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32320957 |
tatgggaactgacaaaacaagttgcaagaatgggacaaaaataagtagcaagaggttagacaaaaatagaaatttttgtctctcactgagacaatttttt |
32320858 |
T |
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| Q |
119 |
gtccaaaggactatcatgtaccattgtatactgnnnnnnnnattattttactattttgcaaattaaacacaattttagtctcgataggcttagagcatca |
218 |
Q |
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| T |
32320857 |
gtccaaaggactatcatgtactattgtatactgtttttttcattattttactattttgcaaattaaacacaattttagtctcgataggcttagagcatca |
32320758 |
T |
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| Q |
219 |
tgtta |
223 |
Q |
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||||| |
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| T |
32320757 |
tgtta |
32320753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 458 - 516
Target Start/End: Complemental strand, 32322243 - 32322187
Alignment:
| Q |
458 |
gtgttttactatatcatgaaagcacttgtgtccattaccatgagacaaaattgtgtaat |
516 |
Q |
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| T |
32322243 |
gtgttttactatatcatgaaagcagttatgtccatga--atgaggcaaaattgtgtaat |
32322187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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