View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3904_low_13 (Length: 338)
Name: NF3904_low_13
Description: NF3904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3904_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 10 - 322
Target Start/End: Original strand, 20476767 - 20477074
Alignment:
| Q |
10 |
attattctccctgttttcctaaatcttctcattttggcgcttctatatacaccacatcgtcatagtaaagtcaatagctttatggtgctgcatgttagta |
109 |
Q |
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| T |
20476767 |
attattctccctgttttcctaaatcttctcattttggcgcttctatatacaccacatcgtcataggaaagtcaatagctttatggtgctgcatgttagta |
20476866 |
T |
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| Q |
110 |
ataacattaaagagtaaatttgcaaaatctgttgcttttgtattgaaacatgcaaattctgccacaggctaggcctgccgcctcccttacnnnnnnncgc |
209 |
Q |
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| T |
20476867 |
ataacattaaaaagtaaatttgcaaaatctgttgcttttgtattgaaacatgcaaattctgccac-----aggcctgccgcctcccttactttttttcgc |
20476961 |
T |
|
| Q |
210 |
cttatcgcatcccacaaacaaatgtcgatcgttctcttaggttgtttcacaatgggagcaagcattagtaaagttaaatcttgagaaaggctgaatctaa |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
20476962 |
cttatcgcatcccacaaacaaatgtcgatcgttctcttagtttgtttcacaatgggagcaagcattagtaaagttaaatcttgagaaaggctgaatctga |
20477061 |
T |
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| Q |
310 |
ctctatgcatatg |
322 |
Q |
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||||||||||||| |
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| T |
20477062 |
ctctatgcatatg |
20477074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 10 - 176
Target Start/End: Complemental strand, 45287196 - 45287031
Alignment:
| Q |
10 |
attattctccctgttttcctaaatcttctcattttggcgcttctatatacaccacatcgtcatagtaaagtcaatagctttatggtgctgcatgttagta |
109 |
Q |
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|||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||| |||||| |||||||||| | |||||||||||||||||||| |
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| T |
45287196 |
attattctccctgtcttcccaaatcttctcattatggcgcttctatatacaccacatcatcatagcaaagtcaataaccttatggtgctgcatgttagtg |
45287097 |
T |
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| Q |
110 |
ataacattaaagagtaaatttgcaaaatctgttgc-ttttgtattgaaacatgcaaattctgccacag |
176 |
Q |
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||||||||||| | |||||||||||||||||| | ||||||||||||||||||||||||| |||||| |
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| T |
45287096 |
ataacattaaaaa--aaatttgcaaaatctgttacattttgtattgaaacatgcaaattctcccacag |
45287031 |
T |
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