View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3904_low_18 (Length: 238)

Name: NF3904_low_18
Description: NF3904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3904_low_18
NF3904_low_18
[»] chr1 (4 HSPs)
chr1 (108-222)||(23529976-23530090)
chr1 (12-44)||(23529880-23529912)
chr1 (12-47)||(23488252-23488287)
chr1 (12-44)||(2970139-2970171)
[»] chr8 (2 HSPs)
chr8 (14-47)||(23796914-23796947)
chr8 (15-47)||(2659795-2659827)
[»] chr7 (3 HSPs)
chr7 (14-47)||(19228719-19228752)
chr7 (14-47)||(25968079-25968112)
chr7 (15-47)||(22478863-22478895)
[»] chr6 (1 HSPs)
chr6 (14-47)||(14185724-14185757)
[»] chr4 (2 HSPs)
chr4 (14-47)||(24650408-24650441)
chr4 (14-47)||(55172671-55172704)
[»] chr2 (2 HSPs)
chr2 (14-47)||(10021857-10021890)
chr2 (14-47)||(40957965-40957998)
[»] chr5 (1 HSPs)
chr5 (15-47)||(1055899-1055931)


Alignment Details
Target: chr1 (Bit Score: 111; Significance: 4e-56; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 108 - 222
Target Start/End: Original strand, 23529976 - 23530090
Alignment:
Q  108 aagtgggaaccctatagacaaactttagtaggaggactcatatttgtccattattttccacccaacaacaaagtacatatgaaaaatgaccttgacctta 207  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23529976 aagtgggaactctatagacaaactttagtaggaggactcatatttgtccattattttccacccaacaacaaagtacatatgaaaaatgaccttgacctta 23530075  T
Q  208 cataatggctcaact 222  Q
    |||||||||||||||    
T  23530076 cataatggctcaact 23530090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 44
Target Start/End: Original strand, 23529880 - 23529912
Alignment:
Q  12 atgaaaagttgacatatttataacgaccaaaaa 44  Q
    |||||||||||||||||||||||||||||||||    
T  23529880 atgaaaagttgacatatttataacgaccaaaaa 23529912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 23488252 - 23488287
Alignment:
Q  12 atgaaaagttgacatatttataacgaccaaaaacat 47  Q
    ||||||||||||||||||||||| ||||||||||||    
T  23488252 atgaaaagttgacatatttataaggaccaaaaacat 23488287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 44
Target Start/End: Original strand, 2970139 - 2970171
Alignment:
Q  12 atgaaaagttgacatatttataacgaccaaaaa 44  Q
    ||||||||||||||||||||||| |||||||||    
T  2970139 atgaaaagttgacatatttataaggaccaaaaa 2970171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 23796914 - 23796947
Alignment:
Q  14 gaaaagttgacatatttataacgaccaaaaacat 47  Q
    ||||||||||||||||||||| ||||||||||||    
T  23796914 gaaaagttgacatatttataaggaccaaaaacat 23796947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 2659827 - 2659795
Alignment:
Q  15 aaaagttgacatatttataacgaccaaaaacat 47  Q
    |||||||||||||||||||| ||||||||||||    
T  2659827 aaaagttgacatatttataaggaccaaaaacat 2659795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 19228719 - 19228752
Alignment:
Q  14 gaaaagttgacatatttataacgaccaaaaacat 47  Q
    |||||||||||||||||||| |||||||||||||    
T  19228719 gaaaagttgacatatttatagcgaccaaaaacat 19228752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 25968112 - 25968079
Alignment:
Q  14 gaaaagttgacatatttataacgaccaaaaacat 47  Q
    ||||||||||||||||||||| ||||||||||||    
T  25968112 gaaaagttgacatatttataaggaccaaaaacat 25968079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 22478863 - 22478895
Alignment:
Q  15 aaaagttgacatatttataacgaccaaaaacat 47  Q
    |||||||||||||||||||| ||||||||||||    
T  22478863 aaaagttgacatatttataaggaccaaaaacat 22478895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 14185757 - 14185724
Alignment:
Q  14 gaaaagttgacatatttataacgaccaaaaacat 47  Q
    ||||||||||||||||||||| ||||||||||||    
T  14185757 gaaaagttgacatatttataaggaccaaaaacat 14185724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 24650408 - 24650441
Alignment:
Q  14 gaaaagttgacatatttataacgaccaaaaacat 47  Q
    ||||||||||||||||||||| ||||||||||||    
T  24650408 gaaaagttgacatatttataaggaccaaaaacat 24650441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 55172704 - 55172671
Alignment:
Q  14 gaaaagttgacatatttataacgaccaaaaacat 47  Q
    ||||||||||||||||||||| ||||||||||||    
T  55172704 gaaaagttgacatatttataaggaccaaaaacat 55172671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 10021890 - 10021857
Alignment:
Q  14 gaaaagttgacatatttataacgaccaaaaacat 47  Q
    ||||||||||||||||||||| ||||||||||||    
T  10021890 gaaaagttgacatatttataaggaccaaaaacat 10021857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 40957965 - 40957998
Alignment:
Q  14 gaaaagttgacatatttataacgaccaaaaacat 47  Q
    ||||||||||||||||||||| ||||||||||||    
T  40957965 gaaaagttgacatatttataaagaccaaaaacat 40957998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 1055931 - 1055899
Alignment:
Q  15 aaaagttgacatatttataacgaccaaaaacat 47  Q
    |||||||||||||||||||| ||||||||||||    
T  1055931 aaaagttgacatatttataaggaccaaaaacat 1055899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University