View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3904_low_3 (Length: 615)
Name: NF3904_low_3
Description: NF3904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3904_low_3 |
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| [»] scaffold0169 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 245 - 605
Target Start/End: Complemental strand, 8343041 - 8342681
Alignment:
| Q |
245 |
ggtgaaaattagacaaatacttagatgacttttcgtgttctacacaaaagaacaggacacaatttcaagaacttttccttgtgtaccatgtcctgatatt |
344 |
Q |
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| T |
8343041 |
ggtgaaaattagacaaatacttagatgacttttcttgttctacacaaaagaacaagacacaatttcaagaacttttccttgtttaccatgtcctgatatt |
8342942 |
T |
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| Q |
345 |
aatatacaaaaatatggaaataaatagtagttgtcaaaatacaagagagttttgaacctgatgaaatgcaaaatacatattatacgttttgctcccatat |
444 |
Q |
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| T |
8342941 |
aatatacaaaaatatggaaataaatagtagttgtcaaaatacaagagagttttgaacctgatgaaatgcaaaatacatattatacgttttgctcccatat |
8342842 |
T |
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| Q |
445 |
cctctttgtagtaaagccaaatcatcagagaaaacttgatctgagtacttcaagagggaaagttttctctgaaactcgaacagatgtaacttatattaat |
544 |
Q |
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| T |
8342841 |
cctctttgtagtaaagccaaatcatcagagaaaacttgatctgagtacttcaagagggaaagttttctctgaaactcgaacagatgtaacttacattaat |
8342742 |
T |
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| Q |
545 |
acaaatcagtttataatagaaagacagatgcttcatggacaaatcagtttaggtgatgatg |
605 |
Q |
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| T |
8342741 |
acaaatcagtttataatagaaagacagatgcttcatggacaaatcagtttaggtgatgatg |
8342681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 8343667 - 8343443
Alignment:
| Q |
18 |
atattatgcatacaggctttagatcttagaaatggtcatattgtacaatatacatatatctgaatatatgagtaagctttatcatattcctatccatatg |
117 |
Q |
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| T |
8343667 |
atattatgcatacaggttttagatcttagaaatggtcatattgtacaatatacatatatctga--------gtaagctttatcatattcctatccatatg |
8343576 |
T |
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| Q |
118 |
gatatctgaatatttgctacaccacatacctaagttatctaatcaacaaagttgaaattgcttagcttggctacatatactgagattttggcactataag |
217 |
Q |
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| T |
8343575 |
gatatctgaatatttgctacaccacatacctaagttatctaa---acaaagttgaaattgcttagcttggctacatatactgagattttggcactataag |
8343479 |
T |
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| Q |
218 |
caagtgattgaaaaatctatattttaaggtgaaaat |
253 |
Q |
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| T |
8343478 |
caagtgattgaaaaatctatattttaaggtgaaaat |
8343443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0169 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0169
Description:
Target: scaffold0169; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 157 - 259
Target Start/End: Complemental strand, 25758 - 25661
Alignment:
| Q |
157 |
taatcaacaaagttgaaattgcttagcttggctacatatactgagattttggcactataagcaagtgattgaaaaatctatattttaaggtgaaaattag |
256 |
Q |
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| T |
25758 |
taatcaacgaagttgatatggcttagctt-----catatactgagatgtgggcactataagcaagttattgaaaagtttatactttaaggtgagaataag |
25664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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