View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3904_low_6 (Length: 505)
Name: NF3904_low_6
Description: NF3904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3904_low_6 |
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| [»] scaffold0553 (1 HSPs) |
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| [»] scaffold0086 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 18 - 501
Target Start/End: Original strand, 33102011 - 33102488
Alignment:
| Q |
18 |
aaaacaacataaaaatattgtttcgtaaatattatgctactcggagtaccgaaataaactgggaatatttcttttctttcgtaaatatcatccctataac |
117 |
Q |
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||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102011 |
aaaacaacataaaaatattgttt-------attatgctactcgaagtaccgaaataaactgggaatatttcttttctttcgtaaatatcatccctataac |
33102103 |
T |
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| Q |
118 |
ttaatatctttcaattttatgcatgtcttccgttgtatcctttaataccattcaaatgttttattctatgagaaaaagaaatcaaccctcgggtagtgta |
217 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102104 |
ttaatatctttcaattttatgcatgtcttccattgtatcctttaataccattcaaatgttttattctatgagaaaaagaaatcaaccctcgggtagtgta |
33102203 |
T |
|
| Q |
218 |
tcatattacatcaaacaaaattgaatgaatatcttagagaaaatttataaagtgattatatcagaacgagtgatttgctgaaatttggaaggataccaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102204 |
tcatattacatcaaacaaaattgaatgaatatcttagagaaaatttataaagtgattatatcagaacgagtgatttgctgaaatttggaaggataccaaa |
33102303 |
T |
|
| Q |
318 |
acacatcaaactaatattttgtgcacagcatcgtggattatatgcttatatttacctcctaa---nnnnnnnncattcattttgtttatatttatggggg |
414 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||| |
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| T |
33102304 |
acacatcaagctaatattttgtgcacagcatcgtggattatatgcttatatttacctcctaattttttttttccattcattttgcttatattta-cgggg |
33102402 |
T |
|
| Q |
415 |
atgtcattacctcaattaaaattatgcctcttcccattcccttgattccacacgcctgattaaacattcacatgtcctatgctactc |
501 |
Q |
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| T |
33102403 |
atgtca-tacctcaattaatattatgcctcttcccattcccttgattccacacgcctgattaaacattcccatgtcctatgttactc |
33102488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 47 - 116
Target Start/End: Complemental strand, 33100522 - 33100453
Alignment:
| Q |
47 |
tattatgctactcggagtaccgaaataaactgggaatatttcttttctttcgtaaatatcatccctataa |
116 |
Q |
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| T |
33100522 |
tattatactactcagagtaccaaaataaactgagaatatttcttttcttttgtaaatatcatccctataa |
33100453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 411 - 483
Target Start/End: Original strand, 15603017 - 15603089
Alignment:
| Q |
411 |
ggggatgtcattacctcaattaaaattatgcctcttcccattcccttgattccacacgcctgattaaacattc |
483 |
Q |
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| T |
15603017 |
ggggatgtcattgcctcaatcaaaattatgcctcttcccattcccttgattaaacacgcctgattgaacattc |
15603089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 374
Target Start/End: Original strand, 15602898 - 15602973
Alignment:
| Q |
300 |
atttggaaggataccaaaacacatcaaactaatattt-tgtgcacagcatcgtggattatatgcttatatttacct |
374 |
Q |
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| T |
15602898 |
atttgaaatgataccaaaagacatcaaactaatactgctatgtacatcatcatggattatatgcttatatttacct |
15602973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0553 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0553
Description:
Target: scaffold0553; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 412 - 483
Target Start/End: Original strand, 7103 - 7174
Alignment:
| Q |
412 |
gggatgtcattacctcaattaaaattatgcctcttcccattcccttgattccacacgcctgattaaacattc |
483 |
Q |
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| T |
7103 |
gggatgtcattgcctcaatcaaaattatgcctcttcccattcccttgattaaacacgcctgattgaacattc |
7174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 411 - 483
Target Start/End: Complemental strand, 42190 - 42118
Alignment:
| Q |
411 |
ggggatgtcattacctcaattaaaattatgcctcttcccattcccttgattccacacgcctgattaaacattc |
483 |
Q |
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|||||||||||| ||||||| ||||||||||||||| ||||||||||||| ||||| |||||| ||||||| |
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| T |
42190 |
ggggatgtcattgcctcaatcaaaattatgcctcttttcattcccttgattaaacacgtctgattgaacattc |
42118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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