View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3904_low_7 (Length: 480)
Name: NF3904_low_7
Description: NF3904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3904_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 20 - 338
Target Start/End: Complemental strand, 354314 - 353996
Alignment:
| Q |
20 |
gaccagacattacaaacacacacaatgactcaacactatttggacatgtttctatggagacaactgaaactcatcatttgttatgcgttgaagaatccat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
354314 |
gaccagacattacaaacacacacaatgactcaacactatttggacatgtttctatggagacaactgaaactcatcatttgttatgcattgaagaatccat |
354215 |
T |
|
| Q |
120 |
aacactgctccagcaatgatcacaattatggagtaatagagggaaagaataaagctaattctctactttacagttacataatgtatgaatttcacttgtc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
354214 |
aacactgctccagcaatgatcacaattatggagtaatagagggaaagaataaagctaattctctactttacagttacataatgtatgaatttcacttgtc |
354115 |
T |
|
| Q |
220 |
tccttcccttcaaccttcaacagatcagacataaccaactgcgggtccgagtttctgagtcttttgatcaagcttctttgttatagtggcaaacttaacc |
319 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
354114 |
tccttcccttcaaccttcaatagatcagacataaccaactgcgggtccgagtttctgagtcttctgatcaagcttctttgttatagtggcaaacttaacc |
354015 |
T |
|
| Q |
320 |
ttcaaaaacaaacatcaca |
338 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
354014 |
ttcaaaaacaaacatcaca |
353996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 403 - 473
Target Start/End: Complemental strand, 353931 - 353861
Alignment:
| Q |
403 |
aataaaaatagcaaaagattcactctttcttcgttcttacatgtttctttctctcttcccactttcatctc |
473 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
353931 |
aataaaaatagcaaaagattcactctttcttcgttcttacatgtttctttctctcttcccactttcttctc |
353861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 10580662 - 10580612
Alignment:
| Q |
94 |
catttgttatgcgttgaagaatccataacactgctccagcaatgatcacaa |
144 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||||||| |||| |
|
|
| T |
10580662 |
catttgttatgcgttgaagaatccatgacactgctccaacaatgataacaa |
10580612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 433 - 468
Target Start/End: Complemental strand, 24579096 - 24579061
Alignment:
| Q |
433 |
tcgttcttacatgtttctttctctcttcccactttc |
468 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
24579096 |
tcgttcttacatgtttctttctctcttcccactttc |
24579061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University