View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3904_low_8 (Length: 450)
Name: NF3904_low_8
Description: NF3904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3904_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 11 - 426
Target Start/End: Original strand, 10563141 - 10563543
Alignment:
| Q |
11 |
cacagaatgaggtaaaagaaaagtcaacaagtaaggtaagacaaaaggaggaaattcctagacacttctttttaactagccaatgaatcactatgaaaca |
110 |
Q |
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| T |
10563141 |
cacagaatgaggtaaaagaaaagtcaacaagtaaggtaagacaaaaggaggaaattcctagacatttctttttaactagcccatgaatcactatgaaaca |
10563240 |
T |
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| Q |
111 |
cgaacacaaacacatggccggacaccagacaaaatgctgacaatgatatgtctagaccccaagtaattgaatgtaactacacgagatcacaagtaattga |
210 |
Q |
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| T |
10563241 |
cgaacacaaacacatggacggacaccagacaaaatgctgacaatgatatgtctagaccccaagtaattgaatgtaactacacgagatcacaagtaattga |
10563340 |
T |
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| Q |
211 |
gtgtaactacatgtgtaggtg-tgttttaatgtctaaaaccagacatgtcttaaatctgaagtgtcagtgctacatagtacataacatagaagctaatca |
309 |
Q |
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| T |
10563341 |
gtgtaactacatgtgtaggtgttgttttaatgtctaaaaccagacatgtcttaaatccaaagtgtcggtgct------------acatagaagctaatca |
10563428 |
T |
|
| Q |
310 |
catatgagtagagacaagacaatataggtaactaagaaaagaagaaagnnnnnnnnnncaagcaggtagtgtttaatagtgcaaaacaaacaattaacac |
409 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
10563429 |
catatgagtagagacaagacgatataggtaactaagaaaagaagaaag--aaaaaaaacaagcaggtagtgtttaatagtgcaaaacaaacaattaacac |
10563526 |
T |
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| Q |
410 |
acagagaaacatattac |
426 |
Q |
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||||||||||||||||| |
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| T |
10563527 |
acagagaaacatattac |
10563543 |
T |
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