View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3905_high_1 (Length: 608)
Name: NF3905_high_1
Description: NF3905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3905_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 17 - 381
Target Start/End: Complemental strand, 5051832 - 5051458
Alignment:
| Q |
17 |
acaatcaacatggagaacttatcagatgatatatggatggagatatggagtcgtgtccatacaagacaggagtgagatgcaaatccatcgcaaagcgctt |
116 |
Q |
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| T |
5051832 |
acaatcaacatggagaacttatcagatgatatatggatggagatatggagtcgtgtccatacaagacaggagtgagatgcaaatccatcgcaaagcgctt |
5051733 |
T |
|
| Q |
117 |
ctta------atctcacagctccaattcaatgaacgatcagtttttcatcaccaatatactttggtccaacaaatgaaagaagaa---aaccagaaaagt |
207 |
Q |
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| T |
5051732 |
cttagcaataatctcacagctccaattcaatgaacggccagttcttcatcaccaatatactttggtccaacaaatgaaagaagaagaaaaccagaaaagt |
5051633 |
T |
|
| Q |
208 |
agcacttcaattttatctcaaagcataaactcctcgtatcgttgtcatccaatctccatctttctactcctgcaaaccaaatttcctagagttttctggg |
307 |
Q |
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| T |
5051632 |
agcacttcaattttatctcaaagcgtaaactcctcgtatggttctcatccaatctccatctttctactcctgcaaaccaaatttcctagagttttctggg |
5051533 |
T |
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| Q |
308 |
ctgaaaattcgaccttaaactcagcaatataacaagat-aaatcatccttatattcgagaattgttggattttca |
381 |
Q |
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| T |
5051532 |
ctgaaaattcgaccctaaactcgacaatataacaagataaaatcatccttatattcgagaattgttggattttca |
5051458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 437 - 596
Target Start/End: Complemental strand, 5051458 - 5051299
Alignment:
| Q |
437 |
acatcctcacgaaagattggatcaaacttccactccctccatagctggaaaccggtcagaaataaacgtgactgtgtactcgaaggcttcgtttgcgaac |
536 |
Q |
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| T |
5051458 |
acatcctcgcgaaagattggatcaaacttccactccctccatagctggaaaccggtcagaaataaacgtgaccgtgtactcgaaggcttcgtttgcgaac |
5051359 |
T |
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| Q |
537 |
cttattattttatagcattgatggaaacacaaaaaagtatctttcaaccatcacaggttc |
596 |
Q |
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| T |
5051358 |
cttattattttatagcattgatggaaacacaaaaaagtatctttcaaccatcacaggttc |
5051299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 596
Target Start/End: Original strand, 51273538 - 51274120
Alignment:
| Q |
19 |
aatcaacatggagaacttatcagatgatatatggatggagatatggagtcgtgtc-catacaagacaggagtgagatgcaaatccatcgcaaagcgcttc |
117 |
Q |
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| T |
51273538 |
aatcaacatggagaatttatcagatgatttattgatagagatatggagtcgtgtttcgtacaagacagcagtgagttgcaaatccatctcaaagcgtttc |
51273637 |
T |
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| Q |
118 |
tta------atctcacagctccaattcaatgaacgatcagtttttcatcaccaatatactttggtccaacaaatgaaagaa---gaaaaccagaaaag-t |
207 |
Q |
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||| ||||||||||||||||||| |||||||||| || |||||||||| ||||||| ||||||||||||||||| ||||||||||||| | |
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| T |
51273638 |
ttagctttaatctcacagctccaattcattgaacgatcaattcttcatcacca---tactttgctccaacaaatgaaagaacaagaaaaccagaaaaaat |
51273734 |
T |
|
| Q |
208 |
agcacttcaattttatctcaaagcataaactcctcgtatcgttgtcatccaatctccatctttctactcctgcaaaccaaatttcctagagttttctggg |
307 |
Q |
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| T |
51273735 |
ggcacttcaattttatctcaaagcgtaaacttctcatttcgttctcaccaaatctcaatctttctactcctgaaaatcaaatttcattgtgttttcttgg |
51273834 |
T |
|
| Q |
308 |
ctgaaaattcgaccttaaactcagcaatataacaagataaat-catc-cttatattcgagaattgttggattttcaaatggcttgattctctgcaagaaa |
405 |
Q |
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| T |
51273835 |
ccgaaaattcgatcctaaacttgacaatataacaagaaaaaaacatgtcttatattcgagaattgtcggattttcaaatggcttgtttctctgcaagaaa |
51273934 |
T |
|
| Q |
406 |
accatacatggtagagtctaccatgtatgcaacatcctcacgaaagattggatcaaacttccactccctccatagctggaaaccggtcagaaataaacgt |
505 |
Q |
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|||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || || ||||||||| ||||||||| |
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| T |
51273935 |
accacacgtggtagagtctaccatgtatgcaacatcctcacaaaagattggatcaaacttccactccctccaccgccgggaaccggtca-caataaacgt |
51274033 |
T |
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| Q |
506 |
gactgtgtactcgaaggcttcgtttgcgaaccttattattttatagcattgatggaaacacaaa-aaagtatctttcaaccatcacaggttc |
596 |
Q |
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| T |
51274034 |
gaccgtgtactagaaggctttgtttgtgaacctta-----ttatagcatcggagaaagcacaaagaaagtatctttcaaccatcacaggttc |
51274120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 110; Significance: 4e-55; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 246 - 477
Target Start/End: Original strand, 14907802 - 14908035
Alignment:
| Q |
246 |
tcgttgtcatccaatctccatctttctactcctgcaaaccaaatttcctagagttttctgggctgaaaattcgaccttaaactcagcaatataacaagat |
345 |
Q |
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||||| ||| |||||||| ||||||||||||||| ||||||||||| || ||||||||| || |||||||||||| ||||||| ||||||||||||| |
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| T |
14907802 |
tcgttctcacccaatctcaatctttctactcctgaaaaccaaatttacttgagttttctttgccgaaaattcgaccctaaactcgacaatataacaagaa |
14907901 |
T |
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| Q |
346 |
aa-atcatc-cttatattcgagaattgttggattttcaaatggcttgattctctgcaagaaaaccatacatggtagagtctaccatgtatgcaacatcct |
443 |
Q |
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| T |
14907902 |
aataaaatgtcttatattcgagaattgttggatcttccaatggcttgtttctgtgcaagaaaaccacacgtagtagagtctaccatgtctgcaacatcct |
14908001 |
T |
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| Q |
444 |
cacgaaagattggatcaaacttccactccctcca |
477 |
Q |
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| T |
14908002 |
cacaaaagataggatcaaatttccactccctcca |
14908035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 14907615 - 14907717
Alignment:
| Q |
19 |
aatcaacatggagaacttatcagatgatatatggatggagatatggagtcgtg-tccatacaagacaggagtgagatgcaaatccatcgcaaagcgcttc |
117 |
Q |
| |
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||||||||||||||| |||||||||||| ||| ||| |||| ||||| ||||| | ||||||| ||| |||||| | |||||||||| |||||||| || |
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| T |
14907615 |
aatcaacatggagaatttatcagatgatttattgatagagacatggattcgtgtttcatacaaaacatcagtgagttacaaatccatctcaaagcgcatc |
14907714 |
T |
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| Q |
118 |
tta |
120 |
Q |
| |
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||| |
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| T |
14907715 |
tta |
14907717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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