View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3905_high_10 (Length: 362)
Name: NF3905_high_10
Description: NF3905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3905_high_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 171; Significance: 9e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 4656874 - 4656629
Alignment:
| Q |
11 |
ttatactactacatctcttttattaaaaatctctatccatccagaacgtggaataatatctcatcaagatgtacatttccaaataagaaagtgaccatgt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4656874 |
ttatactactacatctcttttattaaaaatctctatccatccagaacgtggaataacatctcatcaagatgtacacatccaaataagaaagtgaccatgt |
4656775 |
T |
|
| Q |
111 |
catctaagtgtatggctattttaattttgcctaatactttgaatgtatatctattgttagtctcaaccatct-at-------tattattgatagtgtggg |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || | || ||||||||||| ||||| |
|
|
| T |
4656774 |
catctaagtgtatggctattttaattttgcctaatactttgaatgtatatcttttgttagtctcaattatttgatcaccatctattattgata--gtggg |
4656677 |
T |
|
| Q |
203 |
tgtttgtggagcgataattttatgggaattgttatgatgaatgagtaa |
250 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4656676 |
tgtgtgtggagcgataattttatgggaattgttatgatgaatgagtaa |
4656629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 339
Target Start/End: Complemental strand, 4656570 - 4656524
Alignment:
| Q |
289 |
tgttaagactacacacgtttaatttcatcaccagtggaatatagtttctat |
339 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4656570 |
tgttaagattacacacgttt----tcatcaccagtggaatatagtttctat |
4656524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University