View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3905_high_15 (Length: 256)
Name: NF3905_high_15
Description: NF3905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3905_high_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 34574057 - 34573822
Alignment:
| Q |
1 |
ctttataaactatgttgaacaagttatatgtctgtgtattagaagccaaagacttacccgtgaaaaattctcgcgtgaagcttaaacttggaaagtttaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34574057 |
ctttataaactatgttgaacaagttatatgtctgtgtattagaagccaaagacttacccgtgaaaaattctcgtgtgaagcttaaacttggaaagtttaa |
34573958 |
T |
|
| Q |
101 |
atacaagacaaggatattgaaaaacacgttcaatcccatttggaacgaggagtttgtttttaaggtgaaggatattgctgaggatgtgcttgttgtcaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34573957 |
atacaagacaaggatattgaaaaacacgttcaatcccatttggaacgaggagtttgtttttaaggtgaaggatattgctgaggatgtgcttgttgtcaat |
34573858 |
T |
|
| Q |
201 |
gttgttaatcatagtgatcaatcaaaggtagtggat |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
34573857 |
gttgttaatcatagtgatcaatcaaaggtagtggat |
34573822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University