View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3905_high_20 (Length: 237)
Name: NF3905_high_20
Description: NF3905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3905_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 47350040 - 47349820
Alignment:
| Q |
1 |
tatcatgtggtgtactttttaggtagcacaatattctagcatatccgaaacaacagtgttgtctgtggaataaaaaacatgaataagaaacataatttaa |
100 |
Q |
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| T |
47350040 |
tatcatgtggtgtactttttaggtagcacaatattctagcatatccgaaacaacagtgttgtctgtggaataaaaaacatgaataagaaacataatttaa |
47349941 |
T |
|
| Q |
101 |
taaccctagggtaaaaataatttgagctaggaactaggaagggttaaaatttgaaaaagaatctgagtagctttattaaggaagaatgatgtacctggat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47349940 |
taaccctagggtaaaaataatttgagctaggaactaggaagggttaaaatttgaaaaagaatctgagtagctttattaaggaagaatgatgtacctggat |
47349841 |
T |
|
| Q |
201 |
tctctctggttactttatatc |
221 |
Q |
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||||| ||||||||||||||| |
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| T |
47349840 |
tctctttggttactttatatc |
47349820 |
T |
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