View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3905_high_4 (Length: 462)
Name: NF3905_high_4
Description: NF3905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3905_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 11 - 447
Target Start/End: Original strand, 46875993 - 46876429
Alignment:
| Q |
11 |
caaaggcataaagtacatgtgctgttggggaatcactaataatgcactagctagctttaggtgctgttgtatttgtatagataggtttgtgacttgtgag |
110 |
Q |
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| T |
46875993 |
caaaggcataaagtacatgtgctgttggggaatcactaataatgcactagctagctttaggtactgttgtatttgtatagataggtttgtgacttgtgag |
46876092 |
T |
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| Q |
111 |
tagggttttctaatgattctgttacttatctaaacatctggtagggtaaaccaagctggtgaatagacagagtttcttgttcttttctatagaaaattaa |
210 |
Q |
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| T |
46876093 |
tagggttttctaatgattctgttacttatctaaacatctggtagggtaaaccaagctggtgaatagacagagtttcttgttcttttctatagaaaattaa |
46876192 |
T |
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| Q |
211 |
gatcaatgaaaagcgagattaagattgcaatttgctgggttgcttagtataggaacacacaaatgaaactaaggtgattgctatatttattctaagttct |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
46876193 |
gatcaatgaaaagcgagattaagattgcaatttgctgggttgcttagtataggaacacacaaatgaaactaaggtgattgccatatttattctaagttct |
46876292 |
T |
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| Q |
311 |
aacaacaaaatacctccacctctaaaatgaaagaagaaatcgctgtatgagttgaaaatgttacagttattgatataatttataaacaatgactgatata |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46876293 |
aacaacaaaatacctccacctctaaaatgaaagaagaaatcgctgtatgagttgaaaatgttacagttattgatataatttataaacaatgactgatata |
46876392 |
T |
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| Q |
411 |
ttataagcagcgtactaggtaaaatcatgaatataat |
447 |
Q |
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| T |
46876393 |
ttataggcagcgtactaggtaaaatcatgaatataat |
46876429 |
T |
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