View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3905_high_5 (Length: 443)
Name: NF3905_high_5
Description: NF3905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3905_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 16 - 365
Target Start/End: Complemental strand, 394886 - 394538
Alignment:
| Q |
16 |
caacattaccatgaacatcaaccgtaaccgtaagaatctcttcgaattctcattcctttccatatcaagcggatactgtatcacgtggatttccgggaaa |
115 |
Q |
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| T |
394886 |
caacattaccatgaacatcaaccgtaaccgtaagaatctcttcgaattctcattcctttccatatcaagtggatactgtatcacgtggatttccgggaaa |
394787 |
T |
|
| Q |
116 |
gctccaccttcaccgaaatcctcaaccggatcgtttcagatacggtggtacaattgatttctcctcttcggttgcggtgaacagttgcttaaaccaagga |
215 |
Q |
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| T |
394786 |
gctccaccttcaccgaaatcctcaaccggatcgtttcagatacggtggtacaattggtt-ctcctctttggttgtggtgaacagttgcttaaaccaagga |
394688 |
T |
|
| Q |
216 |
tcgtagctatggtgatagtatgttgctgtagatgattttggttccggaaggagttccttcagagcctccatggttttatgaacagtggaggacggtgggg |
315 |
Q |
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| T |
394687 |
tcgtagctatggtgatagtatgttgctgtagatgattttggttccggaaggagttccttcagagcctccatggttttatgaacagtggaggacggtgggg |
394588 |
T |
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| Q |
316 |
tggggtacggcagcgcaggaggaagacgtttggtgtgtttctactttcta |
365 |
Q |
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| T |
394587 |
tgaggtacggcagcgcaggaggaagacgtttggtgtgtttctactttcta |
394538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 171 - 290
Target Start/End: Original strand, 11456085 - 11456204
Alignment:
| Q |
171 |
gatttctcctcttcggttgcggtgaacagttgcttaaaccaaggatcgtagctatggtgatagtatgttgctgtagatgattttggttccggaaggagtt |
270 |
Q |
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| T |
11456085 |
gatttctcctcttccgttgcagtgaatctttgcttaaaccatggatcgttgctatgatcatagtatgttgttgtggatgattttggttctggaaggagtt |
11456184 |
T |
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| Q |
271 |
ccttcagagcctccatggtt |
290 |
Q |
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| T |
11456185 |
ccttcagagccgccatggtt |
11456204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 11455885 - 11456021
Alignment:
| Q |
16 |
caacattaccatgaacatcaaccgtaaccgtaagaatct----------cttcgaattctcattcctttccatatcaagcggatactgtatcacgtggat |
105 |
Q |
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|||||||||||||| ||||||||||||||| |||||||| ||||||||||| ||||||| |||||||||||||||||||| ||| ||||| |
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| T |
11455885 |
caacattaccatgagcatcaaccgtaaccggaagaatcttcgaacccggcttcgaattcttattccttcccatatcaagcggatactgtgccacatggat |
11455984 |
T |
|
| Q |
106 |
ttccgggaaagctccaccttcaccgaaatcctcaacc |
142 |
Q |
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| T |
11455985 |
ctccgggaaagctccaccttctccaaaatcctcaacc |
11456021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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