View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3905_high_8 (Length: 400)
Name: NF3905_high_8
Description: NF3905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3905_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 30727496 - 30727115
Alignment:
| Q |
1 |
tgtggaggagcagagatgctatacacttgtttttggtacaatagaaatgagttaaattatggcacacactttaggtacatactaaatagttgaagttaag |
100 |
Q |
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| T |
30727496 |
tgtggtggaacagaaatgctatacacttgtttttggtacaatggaaatgtgttaaattatggcacacactttaggtacatactaaatagttgaagttaag |
30727397 |
T |
|
| Q |
101 |
ttacactacca--cagtagtaacagactaacagtattatataccatatgagcttggtggaaacttaagttaaacagtttactatatagtattttatcaca |
198 |
Q |
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| T |
30727396 |
ttacactaccagacagtagtaacagactaacagtattatataccatatgagcttggtggaaacttaagataaacagtttactatatagtattttatcaca |
30727297 |
T |
|
| Q |
199 |
ctcagtcataaccgttatttatctcctttaccatggtgaatcaatcaaatcttctataaatgcaaaacagtttcataaatgggaccccccttagggcctg |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30727296 |
ctcagtcataaccgttatttatctcctttaccatggtgaatcaatcaaatcttctataaatgcaaaacagtttcataaatgggaccccccttagggcctg |
30727197 |
T |
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| Q |
299 |
tttagcaagcaaataaaaacaacagaaaaggttcagtttagtagtactaaaagcaagcaaaatacagaagctaccttataacaat |
383 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30727196 |
tttagcaagcaaataaaaacaacagaaaaggttcagttt---agtactaaaagcaagcaaaatacagaagctaccttataacaat |
30727115 |
T |
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