View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3905_low_1 (Length: 620)

Name: NF3905_low_1
Description: NF3905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3905_low_1
NF3905_low_1
[»] chr4 (12 HSPs)
chr4 (177-601)||(3951015-3951440)
chr4 (1-178)||(3951472-3951648)
chr4 (207-601)||(4027464-4027862)
chr4 (4-178)||(4027231-4027404)
chr4 (6-178)||(3990103-3990274)
chr4 (4-178)||(4012932-4013105)
chr4 (458-550)||(4215801-4215893)
chr4 (440-601)||(4005234-4005396)
chr4 (459-601)||(4013500-4013642)
chr4 (4-166)||(4004518-4004679)
chr4 (333-395)||(4013305-4013367)
chr4 (487-601)||(3991219-3991335)
[»] chr5 (2 HSPs)
chr5 (461-601)||(13400438-13400578)
chr5 (4-158)||(13400089-13400245)


Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 177 - 601
Target Start/End: Complemental strand, 3951440 - 3951015
Alignment:
Q  177 aaatccctccgagttacacgtgtgacgaagttttcaagtcccaattcttgactttaaagaccaaaatgacagtttactctaatttctgcagagtaaattt 276  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||  |||||||||||||||||||||||||||||    
T  3951440 aaatccctccgagctacacgtgtgacgaagttttcaagtcccaattcttgactttaaggaacaaaatga--gtttactctaatttctgcagagtaaattt 3951343  T
Q  277 ttagtattattatacaacggtttctgcataaaagtgtgcaggacattgtatatatggaag---gtcacaaaaaagtttttgtcttactttacagctctaa 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||   |||||||||||||||||||||||||||| ||||||||    
T  3951342 ttagtattattatacaacggtttctgcataaaagtgtgcaggacattatatatatggaagaaggtcacaaaaaagtttttgtcttactttaaagctctaa 3951243  T
Q  374 caatatctacaaatatagaactgaaaactataattacatactgtctcgttgataaatcgaaaattttcagcattaattcataaccacaaatttgaaattg 473  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3951242 caatatctacaaatatagaactgaaaactataattacatactgtctcgttgataaatcgaaaattttcagcattaattcataaccacaaatttgaaattg 3951143  T
Q  474 ataagcagagtatttacagcatatattgtttgagaggctccagaaggcaaatatgccattggattggaacaagtgcactacgaacaatctttctgtctct 573  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3951142 ataagcagagtatttacagcatatattgtttgagaggctccagaaggcaaatatgccattggattggaacaagtgcactacgaacaatctttctgtctct 3951043  T
Q  574 agaaccttgaacgtcacaataagggaaa 601  Q
    ||||||||||||||||||||||||||||    
T  3951042 agaaccttgaacgtcacaataagggaaa 3951015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 3951648 - 3951472
Alignment:
Q  1 gggtgagtagcagaacatatctcacatacatgacttataccgaagtcccataatggccgcatttccgagttagatgtttcttgcgaaaattccatctggc 100  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||    
T  3951648 gggtgagtagcagaatgtatctcacatacatgacttataccgaagtcccataatggccgcatttccgagttagatgtt-cttgcgaaaattccatccggc 3951550  T
Q  101 aatgccttacttccataatgcctgtattgtctctgaggaaatggaaatcaacagaagcagaatcagaggaaattctaa 178  Q
    |||||||||||||||||||||||||||||  |||||||||||  ||||||||||||||||||||||||| || |||||    
T  3951549 aatgccttacttccataatgcctgtattgcttctgaggaaataaaaatcaacagaagcagaatcagaggcaactctaa 3951472  T

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Target: chr4; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 207 - 601
Target Start/End: Original strand, 4027464 - 4027862
Alignment:
Q  207 ttttcaagtcccaattcttgactttaaagaccaaaatgacagtttactctaatttctgcagagtaaatttttagtattattatacaacggtttctgcata 306  Q
    |||||||||||||||||||||| |||| ||||||||||| ||||| ||||||| |||||| | ||| | ||||||  |||||||||| | ||||| ||||    
T  4027464 ttttcaagtcccaattcttgacattaaggaccaaaatgatagtttgctctaatatctgcaaattaa-tatttagttctattatacaatgatttctacata 4027562  T
Q  307 aaagtgtgcaggacattgtatatatggaaggtcacaaaaaagtttttgtcttactttacagctctaacaatatctacaaatatagaact--------gaa 398  Q
    |  ||||||||||||| | ||||| ||||||||||||||| ||||| ||||||||| |||||||  |||||||||||||||||||| ||         ||    
T  4027563 a--gtgtgcaggacatagaatataaggaaggtcacaaaaaggttttggtcttacttcacagctcatacaatatctacaaatatagagctaagaagtaaaa 4027660  T
Q  399 aactataattacatactgtctcgttgataaatcgaaaattttcagcattaattcataaccacaaatttgaaattgataagcagagtatttacagcatata 498  Q
    ||| || |||||||||||| || |||| |||||  ||| |||||| || ||||| ||| |||||||| ||| || |||||||||    |||||||||| |    
T  4027661 aaccatgattacatactgtttcattgaaaaatcttaaagtttcaggatcaattcgtaa-cacaaattcgaatttaataagcaga--cattacagcataaa 4027757  T
Q  499 ttgtttgagaggctccagaaggcaaatatgccattggattggaacaagtgcactacgaacaatctttct--gtctctagaaccttgaacgtcacaataag 596  Q
    || ||||||| ||||  |||  |||||| ||||||| |||||||||| ||||||  |||| ||||||||  |||||||| |||| |||  | ||||||||    
T  4027758 ttatttgagaagctctggaaaacaaatacgccattgaattggaacaaatgcactctgaacgatctttcttcgtctctaggacctcgaaaattacaataag 4027857  T

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Target: chr4; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 4 - 178
Target Start/End: Original strand, 4027231 - 4027404
Alignment:
Q  4 tgagtagcagaacatatctcacatacatgacttataccgaagtcccataatggccgcatttccgagttagatgtttcttgcgaaaattccatctggcaat 103  Q
    ||||||||||||||||  |||||||||||| || |||   ||| ||| ||||| ||||||||  |||||||| ||||| || | |||||||| |||||||    
T  4027231 tgagtagcagaacatacttcacatacatgatttgtacaagagtaccaaaatggacgcatttcgaagttagat-tttctagcaacaattccatatggcaat 4027329  T
Q  104 gccttacttccataatgcctgtattgtctctgaggaaatggaaatcaacagaagcagaatcagaggaaattctaa 178  Q
    |||||||||||| ||||  ||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||    
T  4027330 gccttacttccagaatgtatgtattgtctctgaggaaatgcaaattaacagaagcagaatcagaggcaattctaa 4027404  T

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Target: chr4; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 6 - 178
Target Start/End: Original strand, 3990103 - 3990274
Alignment:
Q  6 agtagcagaacatatctcacatacatgacttataccgaagtcccataatggccgcatttccgagttagatgtttcttgcgaaaattccatctggcaatgc 105  Q
    |||||||| |||| |||||||||||||| |||| ||  ||||||||||||||||||||||  | |||||| ||||| || | ||||||| |||| |||||    
T  3990103 agtagcagcacatttctcacatacatgatttatgccagagtcccataatggccgcatttcaaatttagat-tttctagcaacaattccagctggaaatgc 3990201  T
Q  106 cttacttccataatgcctgtattgtctctgaggaaatggaaatcaacagaagcagaatcagaggaaattctaa 178  Q
    |||||||||| ||| |||||||||| |||||||||||| ||||||| |||| |||||||||| | ||||||||    
T  3990202 cttacttccagaatccctgtattgtgtctgaggaaatgcaaatcaatagaaacagaatcagatgcaattctaa 3990274  T

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Target: chr4; HSP #6
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 4 - 178
Target Start/End: Original strand, 4012932 - 4013105
Alignment:
Q  4 tgagtagcagaacatatctcacatacatgacttataccgaagtcccataatggccgcatttccgagttagatgtttcttgcgaaaattccatctggcaat 103  Q
    |||||||| | |||||| |||||||||||| | ||||   ||||||||||| ||||||||||  |||||| |||  || || | |||||||| | |||||    
T  4012932 tgagtagccgcacatatttcacatacatgaataatactagagtcccataatcgccgcatttctaagttagctgtc-ctagcaacaattccatattgcaat 4013030  T
Q  104 gccttacttccataatgcctgtattgtctctgaggaaatggaaatcaacagaagcagaatcagaggaaattctaa 178  Q
    |||||||||||  |||||||||||||||||||| |||||| |||| |||||||||||||||||||| ||||||||    
T  4013031 gccttacttccggaatgcctgtattgtctctgacgaaatgaaaattaacagaagcagaatcagaggcaattctaa 4013105  T

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Target: chr4; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 458 - 550
Target Start/End: Original strand, 4215801 - 4215893
Alignment:
Q  458 cacaaatttgaaattgataagcagagtatttacagcatatattgtttgagaggctccagaaggcaaatatgccattggattggaacaagtgca 550  Q
    |||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||| |||||| ||||||||||||||    
T  4215801 cacaaattagaaattgataatcagagtatttacagcagatattgtttgagaggctccagaagacaaatatgacattggtttggaacaagtgca 4215893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 440 - 601
Target Start/End: Original strand, 4005234 - 4005396
Alignment:
Q  440 tcagcattaattcataaccacaaatttgaaattgataagcagagtatttacagcatatattgtttgagaggctccagaaggcaaatatgccattggattg 539  Q
    |||||||||||||||||| ||||||| ||| || |||| ||||| | ||||||||||||||  |||||| | ||||||||  ||||||||||||| | ||    
T  4005234 tcagcattaattcataac-acaaattcgaatttaataaacagagcaattacagcatatattagttgagaagttccagaagataaatatgccattgaactg 4005332  T
Q  540 gaacaagtgcactacgaacaatctttct--gtctctagaaccttgaacgtcacaataagggaaa 601  Q
    |||||||||||||  |||||||||||||  |||||||||||||||||   | ||||||||||||    
T  4005333 gaacaagtgcactctgaacaatctttcttcgtctctagaaccttgaataacgcaataagggaaa 4005396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 459 - 601
Target Start/End: Original strand, 4013500 - 4013642
Alignment:
Q  459 acaaatttgaaattgataagcagagtatttacagcatatattgtttgagaggctccagaaggcaaatatgccattggattggaacaagtgcactacgaac 558  Q
    ||||||| |||||  ||||||||||   |||||||||||||| ||||||| ||||| |||| |||||| ||||||| |||||||||| | |||   ||||    
T  4013500 acaaattcgaaatcaataagcagaga--ttacagcatatattatttgagaagctccggaagacaaatacgccattgaattggaacaatttcacacggaac 4013597  T
Q  559 aatctttct--gtctctagaaccttgaacgtcacaataagggaaa 601  Q
    |||||||||  |||||||||||||||||| |||||||||||||||    
T  4013598 aatctttcttcgtctctagaaccttgaacatcacaataagggaaa 4013642  T

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Target: chr4; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 4 - 166
Target Start/End: Original strand, 4004518 - 4004679
Alignment:
Q  4 tgagtagcagaacatatctcacatacatgacttataccgaagtcccataatggccgcatttccgagttagatgtttcttgcgaaaattccatctggcaat 103  Q
    |||||| ||| |||||| |||||||||||| || ||||  || | |  ||||||||  ||||||| ||| ||||| || || |  ||||||||| |||||    
T  4004518 tgagtaccagcacatatttcacatacatgatttgtaccagaggctcggaatggccgtgtttccgaattatatgtt-ctagcaatcattccatcttgcaat 4004616  T
Q  104 gccttacttccataatgcctgtattgtctctgaggaaatggaaatcaacagaagcagaatcag 166  Q
    |||||||||||  ||||||||||||||||||||||||||| |||| | |||||||||||||||    
T  4004617 gccttacttccggaatgcctgtattgtctctgaggaaatgcaaataagcagaagcagaatcag 4004679  T

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Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 333 - 395
Target Start/End: Original strand, 4013305 - 4013367
Alignment:
Q  333 gaaggtcacaaaaaagtttttgtcttactttacagctctaacaatatctacaaatatagaact 395  Q
    |||||| ||||||| ||||| |||||||| ||||||||  |||||||||||||||||||||||    
T  4013305 gaaggtaacaaaaatgttttggtcttactctacagctcatacaatatctacaaatatagaact 4013367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 487 - 601
Target Start/End: Original strand, 3991219 - 3991335
Alignment:
Q  487 ttacagcatatattgtttgagaggctccagaaggcaaatatgccattggattggaacaagtgcactacgaacaatctttct--gtctctagaaccttgaa 584  Q
    |||||||||||||| ||   || ||||| |||| |||||  ||||||| |||||||||| | ||||  |||||||||||||  |||| ||||||||||||    
T  3991219 ttacagcatatattattgatgaagctccggaagacaaatgcgccattgaattggaacaacttcactctgaacaatctttcttcgtctgtagaaccttgaa 3991318  T
Q  585 cgtcacaataagggaaa 601  Q
      |  ||||||||||||    
T  3991319 tatatcaataagggaaa 3991335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 461 - 601
Target Start/End: Original strand, 13400438 - 13400578
Alignment:
Q  461 aaatttgaaattgataagcagagtatttacagcatatattgtttgagaggctccagaaggcaaatatgccattggattggaacaagtgcactacgaacaa 560  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||  || ||| ||||||    
T  13400438 aaatttgaaattgataagcagagtatttacagcatatattgttggagaggctccagaagaaaaatatgccattggattggaacaa--gcgctatgaacaa 13400535  T
Q  561 tctttc--tgtctctagaaccttgaacgtcacaataagggaaa 601  Q
    ||||||  |||||| |||||||||||| || ||||||||||||    
T  13400536 tctttctttgtctcaagaaccttgaacatcgcaataagggaaa 13400578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 4 - 158
Target Start/End: Original strand, 13400089 - 13400245
Alignment:
Q  4 tgagtagcagaacatatctcacatacatgacttataccgaagtcccataatggccgcatttccgagttagatgtttct---tgcgaaaattccatctggc 100  Q
    |||||||||| |||||| |||||||||| | ||||||| |||||||||||||||||||||||||||||||||| ||||    || | |||||||| ||||    
T  13400089 tgagtagcagcacatatttcacatacattatttataccaaagtcccataatggccgcatttccgagttagatg-ttctagcagcaacaattccatatggc 13400187  T
Q  101 aatgccttacttccataatgcctgtattgtctctgaggaaatggaaatcaacagaagc 158  Q
    ||||||||| || || ||||||||||||||||||||||||||| |||| |||||||||    
T  13400188 aatgccttattttcagaatgcctgtattgtctctgaggaaatgtaaattaacagaagc 13400245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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