View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3905_low_11 (Length: 367)
Name: NF3905_low_11
Description: NF3905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3905_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 14 - 354
Target Start/End: Original strand, 4899815 - 4900155
Alignment:
| Q |
14 |
atcatgttatggtatcccaagtgagtactccattttagcttttgaccttaacaagttcccttcagaggaacaaatggttgagctgttccaacaatggaag |
113 |
Q |
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| T |
4899815 |
atcatgttatggtatcccaagtgagtactccattttagcttttgaccttaacaagttcccttcagaggaacaagtggttgagctgttccaacaatggaag |
4899914 |
T |
|
| Q |
114 |
aaggaacaccaaaagttctatatacatccagaagaagcagctttaaggttggagaatttcaagaggaatttgaaatacattgtagagaggaatgcaatga |
213 |
Q |
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| T |
4899915 |
aaggaacaccaaaagttctatatacatccagaagaagcagctttaaggttggagaatttcaagaggaatttgaaatacattgtagagaggaatgcaatga |
4900014 |
T |
|
| Q |
214 |
gaaattctcctgtcggacaccgtcttggattgaacaggttcgctgatatgagcaatgaggagttcaagaataagtttatttcgaaggtgaagaagccaat |
313 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4900015 |
gaaattctcctgtcggacaccatcttggattgaacaggttcgctgatatgagcaatgaagagttcaagaataagtttatttcgaaggtgaagaagccaat |
4900114 |
T |
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| Q |
314 |
tagcaagagggccagtaacttgcatgtcaaggttgaatcct |
354 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
4900115 |
tagcaagagggccagtaacttgcatgtcaaggttgaatcct |
4900155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 14 - 354
Target Start/End: Original strand, 4947209 - 4947552
Alignment:
| Q |
14 |
atcatgttatggtatcccaagtgagtactccattttagcttttgaccttaacaagttcccttcagaggaacaaatggttgagctgttccaacaatggaag |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4947209 |
atcatgttatggtatcccaagtgagtactccattttagcttttgaccttaacaagttcccttcagaggaacaagtggttgagctgttccaacaatggaag |
4947308 |
T |
|
| Q |
114 |
aaggaacaccaaaagttctatatacatccagaagaagcagctttaaggttggagaatttcaagaggaatttgaaatacattgtagagaggaatgcaatga |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4947309 |
aaggaacaccaaaagttctatatacatccagaagaagcagctttaaggttggagaatttcaagaggaatttgaaatacattgtagagaggaatgcaatga |
4947408 |
T |
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| Q |
214 |
gaaattctcctgtcggacaccgtcttggattgaacaggttcgctgatatgagcaatgaggagttcaagaataagtttatttcgaaggtgaa-gaagccaa |
312 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
4947409 |
gaaattctcctgtcggacaccatcttggattgaacaggttcgctgatatgagcaatgaagagttcaagaataagtttatttcgaaggtgaacgaagccaa |
4947508 |
T |
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| Q |
313 |
ttagcaa--gagggccagtaacttgcatgtcaaggttgaatcct |
354 |
Q |
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| T |
4947509 |
ttagcaaaggagggccagtaacttgcatgtcaaggttgaatcct |
4947552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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