View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3905_low_13 (Length: 344)
Name: NF3905_low_13
Description: NF3905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3905_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 14 - 110
Target Start/End: Original strand, 24949170 - 24949269
Alignment:
| Q |
14 |
gaagaagagtcaattaatattattagaattcaaatgtgatatggaactactattttttatggggataaagaaataatatacgt---ataatacgtaagtt |
110 |
Q |
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| T |
24949170 |
gaagaagagtcaattaatattattagaattcaaatgtgatatggaactactattttttatggggataaagaaataatatacgtagaataatacgtaagtt |
24949269 |
T |
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Target: chr7; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 184 - 329
Target Start/End: Original strand, 24949345 - 24949482
Alignment:
| Q |
184 |
agaatttctcatcaatgtctaggtcaataatcatgtgatctgaccgatgatccactgatcagatcagtaacacactgacccagcgtcttgaccaggtcga |
283 |
Q |
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| T |
24949345 |
agaatttctcatcaatgtctcggtcaatagtcatgggatccgaccgatgatccactgattagatcagtaaca--------cagcgtcttgaccagatcga |
24949436 |
T |
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| Q |
284 |
tcagcgctcggagttttaaaacacatgttcatcccaacatagattc |
329 |
Q |
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| T |
24949437 |
tcaccgatccgagttttaaaacacatgttcatcccaacatagattc |
24949482 |
T |
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