View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3905_low_15 (Length: 299)
Name: NF3905_low_15
Description: NF3905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3905_low_15 |
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| [»] chr4 (2 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 55956508 - 55956210
Alignment:
| Q |
1 |
taggaggatcacttccacatcataaacttcgagatctatccaacaaatatggacctcttatgcatcttcagcttggtgaaatttctgcagtggttgtttc |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
55956508 |
taggaggatcacttccacatcatactcttcgagatctatccaacaaatatggacctcttatgtatcttcagcttggtgaaatttctgcagtggttgtttc |
55956409 |
T |
|
| Q |
101 |
atctcctgatttggccaaagagataatgaagacacatgatctttcttttgttcagaggccagaactcctagctcctaaaatattatcatatgattcaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55956408 |
atctcctgatttggccaaagagataatgaagacacatgatctttcttttgttcagaggccagaactcctagctcctaaaatattatcatatgattcaaca |
55956309 |
T |
|
| Q |
201 |
gatattgtttatgctccatacggtgattattggagacagatgaggaaaatatgtacatcacagcttcttagtgctaaaagggttcattatttttcttcc |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55956308 |
gatattgtttatgctccatacggtgattattggagacagatgaggaaaatatgtacatcacagcttcttagtgctaaaagggttcattatttttcttcc |
55956210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 8 - 299
Target Start/End: Complemental strand, 55959948 - 55959654
Alignment:
| Q |
8 |
atcacttccacatcataaacttcgagatctatccaacaaatatggacctcttatgcatcttcagcttggtgaaatttctgcagtggttgtttcatctcct |
107 |
Q |
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|||||||||||| |||| ||||||| |||| || || |||||||||||||||||||||||||||| |||||||||||| || | ||||| ||||| ||| |
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| T |
55959948 |
atcacttccacaccatacacttcgaaatctgtcaaa--aatatggacctcttatgcatcttcagctaggtgaaatttctacaatagttgtctcatcccct |
55959851 |
T |
|
| Q |
108 |
gatttggccaaagagataatgaagacacatgatctttcttttgttcagaggccagaactcctagctcctaaaatattatcatatgattcaacagatattg |
207 |
Q |
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||||| |||||||||||| ||||||||| ||||||| |||||||||| |||||| ||||| | |||||||| |||||| | ||||||||||| | ||||| |
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| T |
55959850 |
gatttagccaaagagatattgaagacacgtgatcttgcttttgttcaaaggccaaaactcattgctcctaatatattagcctatgattcaactggtattg |
55959751 |
T |
|
| Q |
208 |
tttatgctccatacggtgattattggagacagatgaggaaaatatgtacatcacagcttc-----ttagtgctaaaagggttcattatttttcttcc |
299 |
Q |
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| | ||||||||||||||||||||||||||| ||||||||||||||||||||| | |||| ||||||||||||||||||| | |||||||||| |
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| T |
55959750 |
tctttgctccatacggtgattattggagacaaatgaggaaaatatgtacatcagaacttcttatattagtgctaaaagggttcaatctttttcttcc |
55959654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 181; Significance: 8e-98; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 11 - 299
Target Start/End: Complemental strand, 12426828 - 12426540
Alignment:
| Q |
11 |
acttccacatcataaacttcgagatctatccaacaaatatggacctcttatgcatcttcagcttggtgaaatttctgcagtggttgtttcatctcctgat |
110 |
Q |
| |
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||||||||| |||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| || |
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| T |
12426828 |
acttccacaccatacacttggagatctatcccacaaatatggacctcttatgcatcttcagcttggtgaaatttctacagtggttgtttcatcccctaat |
12426729 |
T |
|
| Q |
111 |
ttggccaaagagataatgaagacacatgatctttcttttgttcagaggccagaactcctagctcctaaaatattatcatatgattcaacagatattgttt |
210 |
Q |
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||| | ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| || |||||| ||||||| |||| ||||||| | | |
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| T |
12426728 |
ttgactaaagagataatgaagacacatgatctttcttttgttcagaggccacaattcctagctccaaatatattaacatatgaatcaaaagatattatct |
12426629 |
T |
|
| Q |
211 |
atgctccatacggtgattattggagacagatgaggaaaatatgtacatcacagcttcttagtgctaaaagggttcattatttttcttcc |
299 |
Q |
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|||| |||| ||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||| || | |||||||||| |
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| T |
12426628 |
ttgcttcatatggtgattattggagacagatgagaaaaatatgtacatcagaacttcttagtgctaaaagggtccaatctttttcttcc |
12426540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 31 - 299
Target Start/End: Original strand, 12266012 - 12266280
Alignment:
| Q |
31 |
gagatctatccaacaaatatggacctcttatgcatcttcagcttggtgaaatttctgcagtggttgtttcatctcctgatttggccaaagagataatgaa |
130 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||| ||||||| ||||||| |
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| T |
12266012 |
gagatctatcacacaaatatggacctcttatgcatcttcagcttggtgaaatttctgccgtggttgtttcatcccctaatttgaccaaagaaataatgag |
12266111 |
T |
|
| Q |
131 |
gacacatgatctttcttttgttcagaggccagaactcctagctcctaaaatattatcatatgattcaacagatattgtttatg-ctccatacggtgatta |
229 |
Q |
| |
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|||||||||||||||||| ||| |||||||| | |||| ||||| || ||| || | ||||| |||| ||||||| | ||| || |||| |||||||| |
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| T |
12266112 |
gacacatgatctttctttcgttgagaggccacgattccttgctccgaatataataacctatgaatcaaaagatatt-ctcatgtcttcatatggtgatta |
12266210 |
T |
|
| Q |
230 |
ttggagacagatgaggaaaatatgtacatcacagcttcttagtgctaaaagggttcattatttttcttcc |
299 |
Q |
| |
|
||||||||||||||| ||||||||||||||| | |||||||||||||||||||| || | |||||||||| |
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|
| T |
12266211 |
ttggagacagatgagaaaaatatgtacatcagaacttcttagtgctaaaagggtccaatctttttcttcc |
12266280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 297
Target Start/End: Original strand, 7152319 - 7152571
Alignment:
| Q |
45 |
aaatatggacctcttatgcatcttcagcttggtgaaatttctgcagtggttgtttcatctcctgatttggccaaagagataatgaagacacatgatcttt |
144 |
Q |
| |
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|||||||||||| | ||||| | || ||||||||||||||| | ||| |||| ||||||||| | ||||| || || |||||||| ||||||||| | |
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| T |
7152319 |
aaatatggacctttaatgcacatacaacttggtgaaatttctactgtgattgtatcatctcctaaattggcaaaggaaataatgaaaacacatgatgctg |
7152418 |
T |
|
| Q |
145 |
cttttgttcagaggccagaactcctagctcctaaaatattatcatatgattcaacagatattgtttatgctccatacggtgattattggagacagatgag |
244 |
Q |
| |
|
|||||| | | |||||| |||| || | ||| |||| | | |||| ||||| ||||||||| | | ||||||| ||||||| ||||||||| ||||| |
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| T |
7152419 |
cttttgctaataggccaaaacttctttcccctgaaattatggcctatggttcaaaagatattgtattttctccatatggtgatttttggagacaaatgag |
7152518 |
T |
|
| Q |
245 |
gaaaatatgtacatcacagcttcttagtgctaaaagggttcattatttttctt |
297 |
Q |
| |
|
||||||||| | | ||||| ||||||||||||||||| | |||||||| |
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|
| T |
7152519 |
aaaaatatgtgtctttgaacttctaagtgctaaaagggttcaatctttttctt |
7152571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 45 - 297
Target Start/End: Original strand, 7140488 - 7140740
Alignment:
| Q |
45 |
aaatatggacctcttatgcatcttcagcttggtgaaatttctgcagtggttgtttcatctcctgatttggccaaagagataatgaagacacatgatcttt |
144 |
Q |
| |
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||||||||||| | ||||| || || || ||||||||| ||||||||||||||| || | |||| ||||| || ||||||| ||||||||| || |
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| T |
7140488 |
aaatatggaccattaatgcacctacaactaggtgaaattaatgcagtggttgtttcttcctcaaatttagccaaggaagtaatgaaaacacatgatgttg |
7140587 |
T |
|
| Q |
145 |
cttttgttcagaggccagaactcctagctcctaaaatattatcatatgattcaacagatattgtttatgctccatacggtgattattggagacagatgag |
244 |
Q |
| |
|
||||| | | |||||| |||| | ||| |||||| ||| | |||| || | ||||||||| | | ||||||| ||||||||||||||||| ||||| |
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|
| T |
7140588 |
tttttgctaataggccaaaacttccttctcttaaaattttagcctatggttttaaagatattgtattttctccatatggtgattattggagacaaatgag |
7140687 |
T |
|
| Q |
245 |
gaaaatatgtacatcacagcttcttagtgctaaaagggttcattatttttctt |
297 |
Q |
| |
|
||||||||| | | || |||| ||||||||||||||||| | |||||||| |
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|
| T |
7140688 |
aaaaatatgtgtcttagagattctaagtgctaaaagggttcaatctttttctt |
7140740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 255
Target Start/End: Original strand, 7130269 - 7130335
Alignment:
| Q |
189 |
tatgattcaacagatattgtttatgctccatacggtgattattggagacagatgaggaaaatatgta |
255 |
Q |
| |
|
|||| ||||| |||||||| | | ||||||| ||||||||||||||||| ||||| |||||||||| |
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|
| T |
7130269 |
tatggttcaaaagatattgcattttctccatatggtgattattggagacaaatgagaaaaatatgta |
7130335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 142
Target Start/End: Complemental strand, 22858553 - 22858457
Alignment:
| Q |
46 |
aatatggacctcttatgcatcttcagcttggtgaaatttct-gcagtggttgtttcatctcctgatttggccaaagagataatgaagacacatgatct |
142 |
Q |
| |
|
||||||||||||| ||||| | ||||| |||||| ||||| ||| | ||||||||||||| ||| |||| |||||||||||||| ||||||||||| |
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|
| T |
22858553 |
aatatggacctctcatgcacatgcagctaggtgaactttcttgca-tagttgtttcatctcaagatatggcaaaagagataatgaaaacacatgatct |
22858457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 142
Target Start/End: Original strand, 22901735 - 22901831
Alignment:
| Q |
46 |
aatatggacctcttatgcatcttcagcttggtgaaatttct-gcagtggttgtttcatctcctgatttggccaaagagataatgaagacacatgatct |
142 |
Q |
| |
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|||||||| |||| |||||| | ||||||||||| ||||| ||| | ||||||||||||| || |||| |||||||||||||| ||||||||||| |
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| T |
22901735 |
aatatggatctctaatgcatatgcagcttggtgagctttcttgca-tagttgtttcatctcaagaaatggcaaaagagataatgaaaacacatgatct |
22901831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 22907171 - 22907131
Alignment:
| Q |
46 |
aatatggacctcttatgcatcttcagcttggtgaaatttct |
86 |
Q |
| |
|
|||||||||||||||||||| | | |||||||||||||||| |
|
|
| T |
22907171 |
aatatggacctcttatgcatatgcggcttggtgaaatttct |
22907131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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