View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3905_low_16 (Length: 270)
Name: NF3905_low_16
Description: NF3905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3905_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 19225482 - 19225230
Alignment:
| Q |
1 |
tcggtgtcaaggaatcatggactaagctcttcgatgttggacccttatctgacatcaagcatcctatcgatcttatcggagcatggaagaagggtgatat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19225482 |
tcggtgtcaaggaatcatggactaagctcttcgatgttggacccttatctgacatcaagcatcctatcgatcttatcggagcatggaagaagggtgatat |
19225383 |
T |
|
| Q |
101 |
acttttcagaaatgatgataatgaattagcttgccttgatttaactactggagcaattaagaaaattggtgttaaaacaagttctcaggtaataacttat |
200 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||| |
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| T |
19225382 |
acttttcagaaatgatgataatgaattattttgccttgatttaactactggagcaattgagaaaactggtgttaaaacaggttctcaggtaataacttat |
19225283 |
T |
|
| Q |
201 |
acaaaaacattcttatgattggaggaataaataaatatttgttttgtggccta |
253 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
19225282 |
acaaaaacattcttatgattgaaggaataaataaatatttgttttgtggccta |
19225230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 19219225 - 19218973
Alignment:
| Q |
1 |
tcggtgtcaaggaatcatggactaagctcttcgatgttggacccttatctgacatcaagcatcctatcgatcttatcggagcatggaagaagggtgatat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19219225 |
tcggtgtcaaggaatcatggactaagctcttcgatgttggacccttatctgacatcaagcatcctatcgatcttatcggagcatggaagaagggtgatat |
19219126 |
T |
|
| Q |
101 |
acttttcagaaatgatgataatgaattagcttgccttgatttaactactggagcaattaagaaaattggtgttaaaacaagttctcaggtaataacttat |
200 |
Q |
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||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||| |
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| T |
19219125 |
acttttcagaaatgatgataaagaattaatttgccttgatttaactactggagcaattaagaaaaatggtgttaaaacaggttctaaggtaataacttat |
19219026 |
T |
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| Q |
201 |
acaaaaacattcttatgattggaggaataaataaatatttgttttgtggccta |
253 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
19219025 |
acaaaaacattcttatgattgaaggaataaataaatatttgttttgtggccta |
19218973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 19221549 - 19221594
Alignment:
| Q |
9 |
aaggaatcatggactaagctcttcgatgttggacccttatctgaca |
54 |
Q |
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| T |
19221549 |
aaggaatcatggactaagctctttgatgttggacccttatccgaca |
19221594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 176
Target Start/End: Complemental strand, 27589376 - 27589215
Alignment:
| Q |
6 |
gtcaaggaatcatggactaagctcttcgatgttggacccttatctgacatcaagcatcctatcgatcttatcggagcatggaagaagggtgatatacttt |
105 |
Q |
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||||| |||||||||| ||||||||||||||||||||||||||||||||| ||| || | |||| |||||| || |||||||||||||| ||| |
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| T |
27589376 |
gtcaatgaatcatggattaagctcttcgatgttggacccttatctgacattaag--------cggt-ttattggagcaggggagaagggtgatatatttt |
27589286 |
T |
|
| Q |
106 |
tcagaaatgatgataatgaattagcttgccttgatttaactactggagcaattaagaaaattggtgttaaa |
176 |
Q |
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| | ||| |||||| ||||| |||| | |||||||| ||||| |||| |||| |||| |||||||||||| |
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| T |
27589285 |
ttaaaaaagatgatgatgaactagcctatcttgatttgactaccggagtaattcagaacattggtgttaaa |
27589215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 27595421 - 27595372
Alignment:
| Q |
6 |
gtcaaggaatcatggactaagctcttcgatgttggacccttatctgacat |
55 |
Q |
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|
||||| |||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
27595421 |
gtcaatgaatcatggattaagctcttcgatgttggacccttatctgacat |
27595372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 171
Target Start/End: Complemental strand, 27735593 - 27735434
Alignment:
| Q |
3 |
ggtgtcaaggaatcatggactaagctcttcgatgttggacccttatctgacatcaagcatcctatcgatcttatcggagcatggaagaagggtgatatac |
102 |
Q |
| |
|
|||||||| |||||||||| |||||| |||||||||||||| | |||| |||| | |||||||||| || || ||||||||||||||||| |
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| T |
27735593 |
ggtgtcaatgaatcatggattaagcttttcgatgttggacctatgtctggcatcgaccatcctatcg---------gaacagggaagaagggtgatatat |
27735503 |
T |
|
| Q |
103 |
ttttcagaaatgatgataatgaattagcttgccttgatttaactactggagcaattaagaaaattggtg |
171 |
Q |
| |
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|||| ||||| |||||| |||| | ||||| |||||||||||||| |||| ||| |||| ||||||| |
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| T |
27735502 |
ttttgagaaaagatgatggtgaacttgcttgtcttgatttaactaccggagtaatggagaacattggtg |
27735434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 153
Target Start/End: Complemental strand, 27724352 - 27724210
Alignment:
| Q |
2 |
cggtgtcaaggaatcatggactaagctcttcgatgttggacccttatctgacatcaagcatcctatcgatcttatcggagcatggaagaagggtgatata |
101 |
Q |
| |
|
||||||| |||||||||||| |||||| ||||||||||||| | | || | |||| | ||||| |||||||||| ||||||||||||||||| |
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| T |
27724352 |
cggtgtcgaggaatcatggattaagcttttcgatgttggactcatgtccggcatcgaccatcc---------tatcggagcagggaagaagggtgatata |
27724262 |
T |
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| Q |
102 |
cttttcagaaatgatgataatgaattagcttgccttgatttaactactggag |
153 |
Q |
| |
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|||| ||||| |||||| |||| | ||||| |||||||||| ||||||| |
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| T |
27724261 |
tttttgagaaaagatgatggtgaacttgcttgtcttgatttaagcactggag |
27724210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 153
Target Start/End: Complemental strand, 27717033 - 27716889
Alignment:
| Q |
3 |
ggtgtcaaggaatcatggactaagctcttcgatgttggacccttatctgacatcaagcatcctatcgatcttatcggagcatggaagaagggtgatatac |
102 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||| |||| ||||| ||| ||| |||||||||| | ||| | |||||||||| ||||| |
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| T |
27717033 |
ggtgtcaaggaatcatggattaagctctttgatattggtcccttgtcttgcatggagcatcctattg---------gagtagggaagaagggcaatatat |
27716943 |
T |
|
| Q |
103 |
ttttcagaaa---tgatgataatgaattagcttgccttgatttaactactggag |
153 |
Q |
| |
|
|| ||||||| ||||||||||||| ||||||| |||||||||||||| |||| |
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| T |
27716942 |
ttatcagaaaagatgatgataatgaactagcttgtcttgatttaactaccggag |
27716889 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 178
Target Start/End: Complemental strand, 14682010 - 14681843
Alignment:
| Q |
2 |
cggtgtcaaggaatcatggactaagctcttcgatgttggacccttatctgacatcaagcatcctatcgatcttatcggagcatggaagaagggtgatata |
101 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||| | || | |||| | |||||||| | ||||| ||||||||| ||||||| |
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|
| T |
14682010 |
cggtgtcaatgaatcatggactaagcttttcgatgttggacctatgtccggcatcgaccatcctattg---------gagcagggaagaaggttgatata |
14681920 |
T |
|
| Q |
102 |
cttttcagaaatgatgataatgaattagcttgccttgatttaactactggagcaattaagaaaattggtgttaaaac |
178 |
Q |
| |
|
|||| ||||| ||||| |||| | ||||| ||||||||||||||| ||| |||| |||| |||||||||||||| |
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|
| T |
14681919 |
gttttgagaaaatatgatggtgaacttgcttgtcttgatttaactacttgagtaattgagaacattggtgttaaaac |
14681843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 27230328 - 27230281
Alignment:
| Q |
3 |
ggtgtcaaggaatcatggactaagctcttcgatgttggacccttatct |
50 |
Q |
| |
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|||||||||||||||||||||| ||||||||| ||||||| |||||| |
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|
| T |
27230328 |
ggtgtcaaggaatcatggactagactcttcgatattggacctttatct |
27230281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 37408393 - 37408347
Alignment:
| Q |
1 |
tcggtgtcaaggaatcatggactaagctcttcgatgttggaccctta |
47 |
Q |
| |
|
||||||| |||||||||||||| ||||| |||| ||||||||||||| |
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|
| T |
37408393 |
tcggtgtaaaggaatcatggacgaagctattcgttgttggaccctta |
37408347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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