View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3905_low_18 (Length: 250)
Name: NF3905_low_18
Description: NF3905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3905_low_18 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 47350330 - 47350095
Alignment:
| Q |
12 |
atgaaggagtggggaaggcccatacagcgtcagtattgcttcaaaggctgttttcatcacataaaaggatttatttacagtgctgaagctgcagaatgta |
111 |
Q |
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| T |
47350330 |
atgaaggagtggggaaggcccatacagcgtcagtattgcttcaaaggctgttttcatcacataaaaggatttatttacagtgctgaagctgcagaatgta |
47350231 |
T |
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| Q |
112 |
cccgtttacccatcaatgtgttcactgcacattcaatgcacatattcattcatataataatatcctagcaaaaaaccatatactaaatattatttttact |
211 |
Q |
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| T |
47350230 |
cccgtttacccatcaatgtgttcactgcacattcaatgcacatattcattcatat---aatatcctagcaaaaaaccatatactaaatattatttttact |
47350134 |
T |
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| Q |
212 |
agacatacgggtcatggtccattaaatgtatcattgtca |
250 |
Q |
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| T |
47350133 |
agacatacgggtcatggtccattaaatgtatcattgtca |
47350095 |
T |
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