View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3905_low_19 (Length: 246)
Name: NF3905_low_19
Description: NF3905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3905_low_19 |
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| [»] chr1 (2 HSPs) |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 19225843 - 19225615
Alignment:
| Q |
18 |
gagtatatgggagattatttgcaagtggaaccttttgtgccatattgggacgtatatagtctaaaaagtaactcttggaaaaaactttatgttgatatgc |
117 |
Q |
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| T |
19225843 |
gagtatatgggagattatttgcaagtggaaccttttgtgccatattgggacatatatagtctaaaaagtaactcttggaaaaaactttatgttgatatgc |
19225744 |
T |
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| Q |
118 |
aaaattgttattggaggtcggtaggtgtttgggttcacttgaatggagtgtgccattggtggggggaaacaaacagcgaatcatatgtggtatcatttaa |
217 |
Q |
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| T |
19225743 |
aaaattgttattggaggtcggtaggtgtttgggtttacttgaatggagtgtgccattggtagggggaaacaaatagcgaatcatatgtggtatcatttaa |
19225644 |
T |
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| Q |
218 |
cttgagcaatgaaattcctgttaccactc |
246 |
Q |
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| T |
19225643 |
cttgagcaatgaaattcctgttaccactc |
19225615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 60 - 230
Target Start/End: Original strand, 19221224 - 19221394
Alignment:
| Q |
60 |
tattgggacgtatatagtctaaaaagtaactcttggaaaaaactttatgttgatatgcaaaattgttattggaggtcggtaggtgtttgggttcacttga |
159 |
Q |
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||||||||| |||||||||||| |||||||||||||||||||| |||||||||||| || |||||| ||||||| ||||||||| |||| |||||| |
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| T |
19221224 |
tattgggacatatatagtctaaggcgtaactcttggaaaaaacttcatgttgatatgcgaaggtgttatcggaggtctctaggtgttttggtttacttga |
19221323 |
T |
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| Q |
160 |
atggagtgtgccattggtggggggaaacaaacagcgaatcatatgtggtatcatttaacttgagcaatgaa |
230 |
Q |
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| T |
19221324 |
atggggtgtgccatcggtgggggggaacaaatagtgaatcatatgtggtatcatttaacttgagcactgaa |
19221394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 60 - 246
Target Start/End: Complemental strand, 27595751 - 27595565
Alignment:
| Q |
60 |
tattgggacgtatatagtctaaaaagtaactcttggaaaaaactttatgttgatatgcaaaattgttattggaggtcggtaggtgtttgggttcacttga |
159 |
Q |
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|||||||| |||||||| || | ||||||| |||| | | ||||||||||||||||| | || ||| |||||| |||||||||| | ||||||||||| |
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| T |
27595751 |
tattgggaaatatatagtttagagagtaacttttgggagacactttatgttgatatgcgacatcgtttttggagttcggtaggtgctggggttcacttgg |
27595652 |
T |
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| Q |
160 |
atggagtgtgccattggtggggggaaacaaacagcgaatcatatgtggtatcatttaacttgagcaatgaaattcctgttaccactc |
246 |
Q |
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| T |
27595651 |
atggagtgtgccattggtggagcaaagaagattgtgaaacatatgtggtatcatttaacttgagcactgaagtacctgttaccactc |
27595565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 27724684 - 27724627
Alignment:
| Q |
60 |
tattgggacgtatatagtctaaaaagtaactcttggaaaaaactttatgttgatatgc |
117 |
Q |
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| T |
27724684 |
tattgggatatatatagtctaagaagtaactcttggaaaaaactttatgttgatatgc |
27724627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 106 - 230
Target Start/End: Complemental strand, 27589654 - 27589530
Alignment:
| Q |
106 |
atgttgatatgcaaaattgttattggaggtcggtaggtgtttgggttcacttgaatggagtgtgccattggtggggggaaacaaacagcgaatcatatgt |
205 |
Q |
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| T |
27589654 |
atgttgatatgccaaactgttgttggagtaaggtaggtgttggagttcacttggatggagtgtgccattggttgggaataacagattctgaaacatatgt |
27589555 |
T |
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| Q |
206 |
ggtatcatttaacttgagcaatgaa |
230 |
Q |
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| T |
27589554 |
ggtatcatttaacttgagcactgaa |
27589530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 246
Target Start/End: Complemental strand, 27717263 - 27717171
Alignment:
| Q |
154 |
acttgaatggagtgtgccattggtggggggaaacaaacagcgaatcatatgtggtatcatttaacttgagcaatgaaattcctgttaccactc |
246 |
Q |
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||||||||||||| || ||||||||||||||||| | | ||| |||||||||| || ||||| ||||||||||| | || |||||||||| |
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| T |
27717263 |
acttgaatggagtttgtcattggtggggggaaacggaatgtgaaacatatgtggtgtcgtttaatttgagcaatgaggtaccagttaccactc |
27717171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 27735932 - 27735875
Alignment:
| Q |
60 |
tattgggacgtatatagtctaaaaagtaactcttggaaaaaactttatgttgatatgc |
117 |
Q |
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| T |
27735932 |
tattgggaaatatatagtctacagagtaaccgttggaagaaactttatgttgatatgc |
27735875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 42449501 - 42449567
Alignment:
| Q |
63 |
tgggacgtatatagtctaaaaagtaactcttggaaaaaactttatgttgatatgcaaaattgttatt |
129 |
Q |
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| T |
42449501 |
tgggaagtatatagtctcaaaaataactcttggaagaaacttgattttgatatgcgtaattgttatt |
42449567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 14682341 - 14682285
Alignment:
| Q |
61 |
attgggacgtatatagtctaaaaagtaactcttggaaaaaactttatgttgatatgc |
117 |
Q |
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| T |
14682341 |
attgggacatatatagtctacgaagtaaccattggaagaaactttacgttgatatgc |
14682285 |
T |
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