View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3905_low_20 (Length: 246)
Name: NF3905_low_20
Description: NF3905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3905_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 3644455 - 3644235
Alignment:
| Q |
20 |
ctcaagacaagaatacaagagtataagactatctcatttgttgataagttcaattggactatttcattgtcctgtatattaataccctctttccttggtt |
119 |
Q |
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| T |
3644455 |
ctcaagacaagaatataagagtataagactatctcatttgttgataagttcaattggactatttcattgtcctgtatattaataccctctttccttggtt |
3644356 |
T |
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| Q |
120 |
ttgtcaagttttctgatgttcatattttggcatttttaattttctgtattgtattgttagtgttgtgtggatgggattgcacggatttctgcactttgta |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3644355 |
ttgtcaagttttctgatgttcatattttggcatttttaattttctgtattgtattgttagtgttgtgtggatgggattgcacagatttctgcactttgta |
3644256 |
T |
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| Q |
220 |
ctatgcattttcctttgcttc |
240 |
Q |
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||||||||||||||||||||| |
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| T |
3644255 |
ctatgcattttcctttgcttc |
3644235 |
T |
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