View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3905_low_21 (Length: 241)

Name: NF3905_low_21
Description: NF3905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3905_low_21
NF3905_low_21
[»] chr5 (18 HSPs)
chr5 (95-207)||(11048132-11048244)
chr5 (1-79)||(10746406-10746484)
chr5 (4-77)||(10716365-10716438)
chr5 (4-63)||(10612470-10612529)
chr5 (1-63)||(10605509-10605571)
chr5 (16-81)||(10659458-10659523)
chr5 (1-79)||(10581752-10581830)
chr5 (1-79)||(10739800-10739878)
chr5 (1-63)||(10762231-10762293)
chr5 (13-72)||(7193775-7193834)
chr5 (1-79)||(10565760-10565838)
chr5 (12-77)||(19605243-19605308)
chr5 (136-199)||(10565949-10566012)
chr5 (15-61)||(9827352-9827398)
chr5 (15-61)||(9835721-9835767)
chr5 (19-76)||(9849623-9849680)
chr5 (13-78)||(10559667-10559732)
chr5 (13-49)||(10551570-10551606)
[»] chr2 (1 HSPs)
chr2 (4-63)||(17922808-17922867)
[»] chr6 (5 HSPs)
chr6 (13-63)||(12900321-12900371)
chr6 (13-63)||(12933027-12933077)
chr6 (13-63)||(12958826-12958876)
chr6 (4-63)||(12949358-12949417)
chr6 (13-63)||(12907938-12907988)
[»] chr3 (1 HSPs)
chr3 (5-63)||(31466548-31466606)


Alignment Details
Target: chr5 (Bit Score: 101; Significance: 3e-50; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 95 - 207
Target Start/End: Complemental strand, 11048244 - 11048132
Alignment:
Q  95 gatacttgacactttttctcctcattaattgattgcatatcaaaattcctaacctacaaaatacaaaggcaataacgagcttcctcttgatttgaatttc 194  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11048244 gatacttaacactttttctcctcattaattgattgcatatcaaaatttctaacctacaaaatacaaaggcaataacaagcttcctcttgatttgaatttc 11048145  T
Q  195 aggtgttcacact 207  Q
    |||||||||||||    
T  11048144 aggtgttcacact 11048132  T

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Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 10746484 - 10746406
Alignment:
Q  1 ttatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagcttagcataatcagaaaggc 79  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||    
T  10746484 ttatttgtacaattgaatcaccaaaagaaagaatgaatactgtggatgtcactagagagctcaacataatcagaaaggc 10746406  T

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Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 10716438 - 10716365
Alignment:
Q  4 tttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagcttagcataatcagaaag 77  Q
    ||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||| | |||||||||||||    
T  10716438 tttgtacaatggaatcaccgatagaaagaatgaatattatggatgtcactagagagctcaacataatcagaaag 10716365  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 10612470 - 10612529
Alignment:
Q  4 tttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctta 63  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||| |||||||| ||||    
T  10612470 tttgttcaatggaatcacccaaagaaagaatgaatattgtggatgttactagagaactta 10612529  T

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Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 10605509 - 10605571
Alignment:
Q  1 ttatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctta 63  Q
    |||||||| ||||||||||||| |||||||||||||||||| ||||||| |||| ||||||||    
T  10605509 ttatttgttcaatggaatcaccgaaagaaagaatgaatattatggatgttactaaagagctta 10605571  T

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Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 10659523 - 10659458
Alignment:
Q  16 aatcaccaaaagaaagaatgaatattgtggatgtcactagagagcttagcataatcagaaaggcat 81  Q
    ||||||||||||||||||||||||| || |||||||| |||||| | |||||||||| ||||||||    
T  10659523 aatcaccaaaagaaagaatgaatatagttgatgtcaccagagagttaagcataatcaaaaaggcat 10659458  T

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Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 10581752 - 10581830
Alignment:
Q  1 ttatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagcttagcataatcagaaaggc 79  Q
    |||| ||| ||||||| ||||||||||||||| ||||||||| ||||||   || ||||||||| ||||||||||||||    
T  10581752 ttatgtgttcaatggagtcaccaaaagaaagactgaatattgaggatgtatgtatagagcttagtataatcagaaaggc 10581830  T

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Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 10739878 - 10739800
Alignment:
Q  1 ttatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagcttagcataatcagaaaggc 79  Q
    |||||||| ||||||||||||| |||||||||||||||||| ||||||| | |  |||||||| || |||| |||||||    
T  10739878 ttatttgttcaatggaatcaccgaaagaaagaatgaatattatggatgttaatcaagagcttaacacaatccgaaaggc 10739800  T

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Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 10762293 - 10762231
Alignment:
Q  1 ttatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctta 63  Q
    |||||||| ||||||||||||| |||||||||||||||||| ||||||| |||  ||||||||    
T  10762293 ttatttgttcaatggaatcaccgaaagaaagaatgaatattatggatgttactcaagagctta 10762231  T

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Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 7193775 - 7193834
Alignment:
Q  13 tggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagcttagcataatca 72  Q
    |||||||||||||||||||||||||||| ||||||||||  |||||  | ||||||||||    
T  7193775 tggaatcaccaaaagaaagaatgaatatagtggatgtcatcagagacttaagcataatca 7193834  T

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Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 10565760 - 10565838
Alignment:
Q  1 ttatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagcttagcataatcagaaaggc 79  Q
    |||| ||| ||||||| ||||||||||||||||| || |||| || |||   |||||||||||| ||||||||||||||    
T  10565760 ttatgtgttcaatggagtcaccaaaagaaagaatcaacattgaggttgtatgtagagagcttagtataatcagaaaggc 10565838  T

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Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 19605308 - 19605243
Alignment:
Q  12 atggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagcttagcataatcagaaag 77  Q
    |||||||| || ||||||||||||||||| |  |||| |||||||||||| | |||||||||||||    
T  19605308 atggaatctcccaaagaaagaatgaatatagaagatgccactagagagctaaacataatcagaaag 19605243  T

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Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 199
Target Start/End: Original strand, 10565949 - 10566012
Alignment:
Q  136 aaaattcctaacctacaaaatacaaaggcaataacgagcttcctcttgatttgaatttcaggtg 199  Q
    ||||||||||| ||||||||||||| || ||||| |   ||| |||||||||||||||||||||    
T  10565949 aaaattcctaaactacaaaatacaatggtaataatggatttcttcttgatttgaatttcaggtg 10566012  T

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Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 9827398 - 9827352
Alignment:
Q  15 gaatcaccaaaagaaagaatgaatattgtggatgtcactagagagct 61  Q
    ||||||||||||||||||||||| || || ||||| |||||||||||    
T  9827398 gaatcaccaaaagaaagaatgaacatagtagatgttactagagagct 9827352  T

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Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 9835767 - 9835721
Alignment:
Q  15 gaatcaccaaaagaaagaatgaatattgtggatgtcactagagagct 61  Q
    ||||||||||||||||||||||| || || ||||| |||||||||||    
T  9835767 gaatcaccaaaagaaagaatgaacatagtagatgttactagagagct 9835721  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 9849680 - 9849623
Alignment:
Q  19 caccaaaagaaagaatgaatattgtggatgtcactagagagcttagcataatcagaaa 76  Q
    |||| |||| |||||||||||   ||||||||||||||||||| | ||||||||||||    
T  9849680 caccgaaagcaagaatgaatacaatggatgtcactagagagctaaacataatcagaaa 9849623  T

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Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 10559667 - 10559732
Alignment:
Q  13 tggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagcttagcataatcagaaagg 78  Q
    ||||||| |||| | |||||||||||||  |||||||||||||||| || | ||| ||||||||||    
T  10559667 tggaatcgccaacacaaagaatgaatatattggatgtcactagagaactaaacatgatcagaaagg 10559732  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 10551570 - 10551606
Alignment:
Q  13 tggaatcaccaaaagaaagaatgaatattgtggatgt 49  Q
    |||||||||||||||||||||||||||| || |||||    
T  10551570 tggaatcaccaaaagaaagaatgaatatggttgatgt 10551606  T

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Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 17922867 - 17922808
Alignment:
Q  4 tttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctta 63  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17922867 tttgttcattggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctta 17922808  T

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Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 12900321 - 12900371
Alignment:
Q  13 tggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctta 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12900321 tggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctta 12900371  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 12933027 - 12933077
Alignment:
Q  13 tggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctta 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12933027 tggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctta 12933077  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 12958826 - 12958876
Alignment:
Q  13 tggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctta 63  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12958826 tggaatcaccaaaagaaagaatgaatattgtcgatgtcactagagagctta 12958876  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 12949358 - 12949417
Alignment:
Q  4 tttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctta 63  Q
    ||||| || |||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  12949358 tttgttcattggaatcatcaaatgaaagaatgaatattgtggatgtcactagagagctta 12949417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 12907938 - 12907988
Alignment:
Q  13 tggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctta 63  Q
    |||||||| |||||||||||||||||||||| ||||||| |||||||||||    
T  12907938 tggaatcaacaaaagaaagaatgaatattgtagatgtcaatagagagctta 12907988  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 31466606 - 31466548
Alignment:
Q  5 ttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctta 63  Q
    |||| |||||||||||||||||||||| |||| ||| || || |||| |||||||||||    
T  31466606 ttgttcaatggaatcaccaaaagaaaggatgagtatggttgaagtcattagagagctta 31466548  T

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