View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3905_low_25 (Length: 222)
Name: NF3905_low_25
Description: NF3905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3905_low_25 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 33229741 - 33229932
Alignment:
| Q |
15 |
cacagagactatctatatcatatatatgtaagtgtaactggttcttttttcttgtagggagcataaattatcagattatgaaaaaagtctctctgatgtg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
33229741 |
cacagagactatctatatcatatatatgtaagtgtaactggttcttttttcttgtagggagcataaattatcagattatgtaaaaagtctctctgatgtg |
33229840 |
T |
|
| Q |
115 |
gttaaggagttgaggcgtcatttgaaaagttgtgaactggaaattggtatataaataactacatgtgttctgtggtgcttcttgttacttca |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33229841 |
gttaaggagttgaggcgtcatttgaaaagttgtgaactggaaattggtatataaataactacatgtgttctgtggtgcttcttgttacttca |
33229932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University