View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3905_low_3 (Length: 511)

Name: NF3905_low_3
Description: NF3905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3905_low_3
NF3905_low_3
[»] chr2 (10 HSPs)
chr2 (92-500)||(15360728-15361133)
chr2 (350-481)||(2063137-2063269)
chr2 (329-442)||(15126130-15126244)
chr2 (353-481)||(40470651-40470780)
chr2 (388-481)||(25504579-25504670)
chr2 (1-56)||(15360636-15360688)
chr2 (352-384)||(13699066-13699098)
chr2 (352-384)||(25504689-25504721)
chr2 (352-387)||(7696248-7696283)
chr2 (352-387)||(24308513-24308548)
[»] chr5 (12 HSPs)
chr5 (328-480)||(27713311-27713462)
chr5 (331-450)||(22675034-22675154)
chr5 (366-467)||(4941346-4941446)
chr5 (352-485)||(24071948-24072080)
chr5 (388-481)||(8731237-8731328)
chr5 (426-504)||(5187278-5187355)
chr5 (352-384)||(8731186-8731218)
chr5 (442-501)||(25992352-25992411)
chr5 (426-501)||(33258560-33258634)
chr5 (352-386)||(7682840-7682874)
chr5 (352-388)||(14302202-14302238)
chr5 (352-388)||(30097619-30097655)
[»] chr4 (7 HSPs)
chr4 (350-493)||(28967134-28967277)
chr4 (349-415)||(12296442-12296508)
chr4 (339-415)||(46487528-46487604)
chr4 (420-479)||(38930118-38930177)
chr4 (351-415)||(27314451-27314515)
chr4 (352-387)||(43373866-43373901)
chr4 (455-501)||(22810844-22810889)
[»] chr6 (5 HSPs)
chr6 (328-435)||(13098299-13098406)
chr6 (329-403)||(16180659-16180732)
chr6 (388-493)||(16180535-16180642)
chr6 (352-387)||(32935102-32935137)
chr6 (353-387)||(17278261-17278295)
[»] scaffold0499 (1 HSPs)
scaffold0499 (328-435)||(6804-6911)
[»] chr7 (8 HSPs)
chr7 (347-450)||(25438412-25438517)
chr7 (328-435)||(48058394-48058503)
chr7 (352-415)||(9107413-9107475)
chr7 (352-387)||(28534288-28534323)
chr7 (352-387)||(23983491-23983526)
chr7 (407-481)||(25438673-25438748)
chr7 (438-501)||(48058343-48058406)
chr7 (328-366)||(47456819-47456857)
[»] chr1 (6 HSPs)
chr1 (328-471)||(19598882-19599031)
chr1 (352-415)||(16577546-16577608)
chr1 (352-387)||(37200388-37200423)
chr1 (429-480)||(50588964-50589015)
chr1 (439-485)||(17033942-17033988)
chr1 (352-385)||(38548838-38548871)
[»] chr8 (3 HSPs)
chr8 (426-479)||(8862314-8862367)
chr8 (353-387)||(25184919-25184953)
chr8 (352-387)||(30235891-30235926)
[»] chr3 (6 HSPs)
chr3 (366-481)||(47945974-47946090)
chr3 (352-387)||(1652650-1652685)
chr3 (352-383)||(12086528-12086559)
chr3 (328-387)||(25594308-25594366)
chr3 (352-387)||(27399231-27399266)
chr3 (351-399)||(40689505-40689552)
[»] scaffold1384 (1 HSPs)
scaffold1384 (426-476)||(1347-1397)
[»] scaffold0063 (1 HSPs)
scaffold0063 (456-500)||(58493-58537)


Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 92 - 500
Target Start/End: Original strand, 15360728 - 15361133
Alignment:
Q  92 ctcgttttctccagagcattttatgagtttgaattacacaatgagtttgaagaacactaacgtagctggaaaaattactgataataggtactaacattgt 191  Q
    |||||||||| |  |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||    
T  15360728 ctcgttttcttccaagcaatttatgagtttgaatcacacaatgagtttgaagaacactaacgtagctggaaaaattactgataataggta---acattgt 15360824  T
Q  192 acaggttttatggagtagatgaccatttagtnnnnnnnnnnnnncttagaagattaatgtagtgcatacatctaacataaatgatcacataatataattt 291  Q
    |||||||||||||||||||||||||||||||             |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  15360825 acaggttttatggagtagatgaccatttagtaaaaaacaaaaaacttagaagattaatttagtgcatacatctaacataaatgatcacatagtataattt 15360924  T
Q  292 gcctaaaaattaggtaaagcactctaaatgcatgtttggtggtttggtgaaggggtatgtttttaggtggtgatgtttattttggtgggtgttgtcaggt 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15360925 gcctaaaaattaggtaaagcactctaaatgcatgtttggtggtttcgtgaaggggtatgtttttaggtggtgatgtttattttggtgggtgttgtcaggt 15361024  T
Q  392 agggtttgactaggtgttttgtgtgtaagggttgttatggtgtttatttttcgggtgtttcgtttatatacggcgcctttcgtttgtattatctatttca 491  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||    
T  15361025 agggtttgactaggtgttttgtgtgtaagggttgttatggtgtttattttttgggtgtttcgtctatatacggcgcctttcgtttgtattatctgtttca 15361124  T
Q  492 ccagtctct 500  Q
    |||||||||    
T  15361125 ccagtctct 15361133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 350 - 481
Target Start/End: Original strand, 2063137 - 2063269
Alignment:
Q  350 gtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtaagggt---tgttatggtgtttatttttcggg 446  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||| || |   | |||||||||||||||||||||    
T  2063137 gtttttaggtggtgatgtttattttggcgggtgttgtcaggtagggtttgactaggtg--ttgtgtgtagggatgtcttttatggtgtttatttttcggg 2063234  T
Q  447 tgtttcgtttatatacggcgcctttcgtttgtatt 481  Q
    |||||||  |||||||||| |||||||||||||||    
T  2063235 tgtttcgcctatatacggcacctttcgtttgtatt 2063269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 329 - 442
Target Start/End: Complemental strand, 15126244 - 15126130
Alignment:
Q  329 ggtggtttggtgaaggggtatgtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtaagggtt-gtt 427  Q
    |||||||| ||||| | || ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||  ||    
T  15126244 ggtggtttcgtgaacgagtttgtttttaggtggtgatgtttattttggtgggtattgtcaggtaggatttgactaggtgttttgtgtgtaagggttcttt 15126145  T
Q  428 atggtgtttattttt 442  Q
    |||| ||||||||||    
T  15126144 atggggtttattttt 15126130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 353 - 481
Target Start/End: Original strand, 40470651 - 40470780
Alignment:
Q  353 tttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtaaggg-ttgttatggtgtttatttttcgggtgttt 451  Q
    ||||||||||||||||||||||||||  ||||||||||| || ||| |||||||||||| |||||||||| || ||||| | ||| |||||  ||||||     
T  40470651 tttaggtggtgatgtttattttggtgactgttgtcaggttggatttaactaggtgttttatgtgtaagggttttttatgttttttttttttaaggtgttc 40470750  T
Q  452 cgtttatatacggcgcctttcgtttgtatt 481  Q
    ||  ||||||| | | ||||||||||||||    
T  40470751 cgcatatatacagtgtctttcgtttgtatt 40470780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 388 - 481
Target Start/End: Complemental strand, 25504670 - 25504579
Alignment:
Q  388 aggtagggtttgactaggtgttttgtgtgtaagggttgttat-ggtgtttatttttcgggtgtttcgtttatatacggcgcctttcgtttgtatt 481  Q
    |||| |||||||||||||||||  ||||||| ||| | || | ||||||||||||| ||||||||||| |||||||||||||||| |||||||||    
T  25504670 aggtggggtttgactaggtgtt--gtgtgtagggggtctttttggtgtttattttt-gggtgtttcgtctatatacggcgccttttgtttgtatt 25504579  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 15360636 - 15360688
Alignment:
Q  1 tcatgaaccaagattgcacctatgatttattattcttctctaatttggtttccaac 56  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||| |||||||    
T  15360636 tcatgaaccaagattgcacctatgat---ttattcttctctaatttgggttccaac 15360688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 352 - 384
Target Start/End: Complemental strand, 13699098 - 13699066
Alignment:
Q  352 ttttaggtggtgatgtttattttggtgggtgtt 384  Q
    |||||||||||||||||||||||||||||||||    
T  13699098 ttttaggtggtgatgtttattttggtgggtgtt 13699066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 352 - 384
Target Start/End: Complemental strand, 25504721 - 25504689
Alignment:
Q  352 ttttaggtggtgatgtttattttggtgggtgtt 384  Q
    |||||||||||||||||||||||||||||||||    
T  25504721 ttttaggtggtgatgtttattttggtgggtgtt 25504689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 387
Target Start/End: Original strand, 7696248 - 7696283
Alignment:
Q  352 ttttaggtggtgatgtttattttggtgggtgttgtc 387  Q
    |||||||||||||||| |||||||||||||||||||    
T  7696248 ttttaggtggtgatgtgtattttggtgggtgttgtc 7696283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 387
Target Start/End: Complemental strand, 24308548 - 24308513
Alignment:
Q  352 ttttaggtggtgatgtttattttggtgggtgttgtc 387  Q
    ||||||||| ||||||||||||||||||||||||||    
T  24308548 ttttaggtgatgatgtttattttggtgggtgttgtc 24308513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 5e-45; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 328 - 480
Target Start/End: Original strand, 27713311 - 27713462
Alignment:
Q  328 tggtggtttggtgaaggggtatgtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtaagggttgtt 427  Q
    ||||||||| |||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |  || ||    
T  27713311 tggtggtttcgtgaaggggtttgtttttaggcggtgatgtttattttggggggtgttgtcaggtagggtttgactaggtg-tttgtgtgtaggatttttt 27713409  T
Q  428 atggtgtttatttttcgggtgtttcgtttatatacggcgcctttcgtttgtat 480  Q
    |||| |||||||||||||||||| ||  |||||| ||||||||||||||||||    
T  27713410 atggagtttatttttcgggtgttccgcctatatatggcgcctttcgtttgtat 27713462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 331 - 450
Target Start/End: Complemental strand, 22675154 - 22675034
Alignment:
Q  331 tggtttggtgaagggg-tatgtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtaaggg-ttgtta 428  Q
    |||||| ||||||||| | |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||| ||| || |||    
T  22675154 tggttttgtgaagggggtctgtttttaggtggtgatgtttattttggtgggtg-tgtcaggtatggtttgactaggagttttgtgtgtaggggtttttta 22675056  T
Q  429 tggtgtttatttttcgggtgtt 450  Q
    ||||| |||||||| |||||||    
T  22675055 tggtgattattttttgggtgtt 22675034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 366 - 467
Target Start/End: Complemental strand, 4941446 - 4941346
Alignment:
Q  366 gtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtaagggttgttatggtgtttatttttcgggtgtttcgtttatatacggc 465  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||| |  || |||||||||||||||||| |||||| ||| ||||||||||    
T  4941446 gtttattttggtgggtgt-gtcaggtagggtttgattaggtgttttgtgtgtaggattttttatggtgtttatttttcaggtgttccgtctatatacggc 4941348  T
Q  466 gc 467  Q
    ||    
T  4941347 gc 4941346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 352 - 485
Target Start/End: Complemental strand, 24072080 - 24071948
Alignment:
Q  352 ttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtaagggt-tgttatggtgtttatttttcgggtgtt 450  Q
    ||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||  ||||  | | || | ||||| |||||| ||||||||||||    
T  24072080 ttttatgtggtgatgtttattttggtgggtgttg-aaggtagggtttgactaggtgttacgtgtagaggtgtcttttatgatgttta-ttttcgggtgtt 24071983  T
Q  451 tcgtttatatacggcgcctttcgtttgtattatct 485  Q
     ||  ||||||||||||| || |||||||||||||    
T  24071982 ccgcctatatacggcgcccttagtttgtattatct 24071948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 388 - 481
Target Start/End: Original strand, 8731237 - 8731328
Alignment:
Q  388 aggtagggtttgactaggtgttttgtgtgtaagggttgttat-ggtgtttatttttcgggtgtttcgtttatatacggcgcctttcgtttgtatt 481  Q
    |||| |||||||||||||||||  ||||||| ||| | || | ||||||||||||| ||||||||||| |||||||||||||||| |||||||||    
T  8731237 aggtggggtttgactaggtgtt--gtgtgtagggggtctttttggtgtttattttt-gggtgtttcgtctatatacggcgccttttgtttgtatt 8731328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 426 - 504
Target Start/End: Original strand, 5187278 - 5187355
Alignment:
Q  426 ttatggtgtttatttttcgggtgtttcgtttatatacggcgcctttcgtttgtattatctatttcaccagtctctgctc 504  Q
    |||||||||||| |||||||||| ||| | ||||| |||||||||| ||||||||| || ||||||||  |||||||||    
T  5187278 ttatggtgttta-ttttcgggtgcttcatctatatgcggcgccttttgtttgtattctcaatttcaccgatctctgctc 5187355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 352 - 384
Target Start/End: Original strand, 8731186 - 8731218
Alignment:
Q  352 ttttaggtggtgatgtttattttggtgggtgtt 384  Q
    |||||||||||||||||||||||||||||||||    
T  8731186 ttttaggtggtgatgtttattttggtgggtgtt 8731218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 442 - 501
Target Start/End: Original strand, 25992352 - 25992411
Alignment:
Q  442 tcgggtgtttcgtttatatacggcgcctttcgtttgtattatctatttcaccagtctctg 501  Q
    ||||||||| ||  |||||||||||||||| ||||||||||||  ||||||| |||||||    
T  25992352 tcgggtgttccgcatatatacggcgccttttgtttgtattatcattttcaccggtctctg 25992411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 426 - 501
Target Start/End: Complemental strand, 33258634 - 33258560
Alignment:
Q  426 ttatggtgtttatttttcgggtgtttcgtttatatacggcgcctttcgtttgtattatctatttcaccagtctctg 501  Q
    |||||||||||||||| ||||||||||   ||||||||||||||||  ||||||||  | |||||||| |||||||    
T  33258634 ttatggtgtttatttt-cgggtgtttcacatatatacggcgccttttatttgtatttccaatttcaccggtctctg 33258560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 352 - 386
Target Start/End: Original strand, 7682840 - 7682874
Alignment:
Q  352 ttttaggtggtgatgtttattttggtgggtgttgt 386  Q
    |||||||||||||||| ||||||||||||||||||    
T  7682840 ttttaggtggtgatgtgtattttggtgggtgttgt 7682874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 352 - 388
Target Start/End: Complemental strand, 14302238 - 14302202
Alignment:
Q  352 ttttaggtggtgatgtttattttggtgggtgttgtca 388  Q
    ||||||||||||| || ||||||||||||||||||||    
T  14302238 ttttaggtggtgacgtgtattttggtgggtgttgtca 14302202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 352 - 388
Target Start/End: Original strand, 30097619 - 30097655
Alignment:
Q  352 ttttaggtggtgatgtttattttggtgggtgttgtca 388  Q
    ||||||||||||| || ||||||||||||||||||||    
T  30097619 ttttaggtggtgacgtgtattttggtgggtgttgtca 30097655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 350 - 493
Target Start/End: Original strand, 28967134 - 28967277
Alignment:
Q  350 gtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtaaggg-ttgttatggtgtttatttttcgggtg 448  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||| |||||||| ||||| ||||    
T  28967134 gtttttaggtggcgatgtttattttggtgggtgttgtcaggtagggtttgacttggtgttttgtgtgtaagggttttttagggtgttta-ttttcaggtg 28967232  T
Q  449 tttcgtttatatacggcgcctttcgtttgtattatctatttcacc 493  Q
    || ||  ||||||| |||||||||||||||||||||| |||||||    
T  28967233 ttccgcctatatacagcgcctttcgtttgtattatctgtttcacc 28967277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 349 - 415
Target Start/End: Original strand, 12296442 - 12296508
Alignment:
Q  349 tgtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgt 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  12296442 tgtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttggctaggtgttgtgtgt 12296508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 339 - 415
Target Start/End: Original strand, 46487528 - 46487604
Alignment:
Q  339 tgaaggggtatgtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgt 415  Q
    |||||| || |||||||||| |||||||||||||||||||||| |||| | |||||||||| ||||||||| |||||    
T  46487528 tgaaggagtctgtttttaggaggtgatgtttattttggtgggtattgttaagtagggtttgtctaggtgttgtgtgt 46487604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 420 - 479
Target Start/End: Original strand, 38930118 - 38930177
Alignment:
Q  420 gggttgttatggtgtttatttttcgggtgtttcgtttatatacggcgcctttcgtttgta 479  Q
    ||||| ||||||||||||||||||||||||| |   |||||||||| |||||||||||||    
T  38930118 gggtttttatggtgtttatttttcgggtgttccacctatatacggctcctttcgtttgta 38930177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 415
Target Start/End: Complemental strand, 27314515 - 27314451
Alignment:
Q  351 tttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgt 415  Q
    |||||||||  ||||||||||||| || ||||||||| ||||||||||||| || |||| |||||    
T  27314515 tttttaggtactgatgtttattttagtaggtgttgtctggtagggtttgaccagatgttgtgtgt 27314451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 387
Target Start/End: Complemental strand, 43373901 - 43373866
Alignment:
Q  352 ttttaggtggtgatgtttattttggtgggtgttgtc 387  Q
    ||||||| ||||||||||||||||||||||||||||    
T  43373901 ttttagggggtgatgtttattttggtgggtgttgtc 43373866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 455 - 501
Target Start/End: Complemental strand, 22810889 - 22810844
Alignment:
Q  455 ttatatacggcgcctttcgtttgtattatctatttcaccagtctctg 501  Q
    ||||||||||||||||| ||||||||| || ||||||||||||||||    
T  22810889 ttatatacggcgccttt-gtttgtattctcaatttcaccagtctctg 22810844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 4e-42; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 328 - 435
Target Start/End: Complemental strand, 13098406 - 13098299
Alignment:
Q  328 tggtggtttggtgaaggggtatgtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtaagggttgtt 427  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||    
T  13098406 tggtggttttgtgaaggggtctgtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtatgagttttt 13098307  T
Q  428 atggtgtt 435  Q
    ||||||||    
T  13098306 atggtgtt 13098299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 329 - 403
Target Start/End: Complemental strand, 16180732 - 16180659
Alignment:
Q  329 ggtggtttggtgaaggggtatgtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgacta 403  Q
    ||||||||  ||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  16180732 ggtggtttcttgaaggggtctgtttt-aggtggtgatgtttattttggtggatgttgtcaggtagggtttgacta 16180659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 388 - 493
Target Start/End: Complemental strand, 16180642 - 16180535
Alignment:
Q  388 aggtagggtttgactaggtgttttgtgtgtaagggttgtt-atggtgtttatttttcg-ggtgtttcgtttatatacggcgcctttcgtttgtattatct 485  Q
    ||||||||||||||||| ||||||||||| | | ||| || |||||||||||||||   |||||| || |||||||||| | ||||| ||||||||||||    
T  16180642 aggtagggtttgactagttgttttgtgtgaaggagttttttatggtgtttattttttttggtgttccgcttatatacggtgtctttcatttgtattatct 16180543  T
Q  486 atttcacc 493  Q
     |||||||    
T  16180542 gtttcacc 16180535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 387
Target Start/End: Complemental strand, 32935137 - 32935102
Alignment:
Q  352 ttttaggtggtgatgtttattttggtgggtgttgtc 387  Q
    |||||||||||| |||||||||||||||||||||||    
T  32935137 ttttaggtggtggtgtttattttggtgggtgttgtc 32935102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 353 - 387
Target Start/End: Complemental strand, 17278295 - 17278261
Alignment:
Q  353 tttaggtggtgatgtttattttggtgggtgttgtc 387  Q
    |||||||||| ||||||||||||||||||||||||    
T  17278295 tttaggtggtaatgtttattttggtgggtgttgtc 17278261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 328 - 435
Target Start/End: Original strand, 6804 - 6911
Alignment:
Q  328 tggtggtttggtgaaggggtatgtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtaagggttgtt 427  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || || |     
T  6804 tggtggttttgtgaaggggtctgtttttaggtggtgatgtttattttggtgggtgttgtcaggttgggtttgactaggtgttttgtgtgtatggatttta 6903  T
Q  428 atggtgtt 435  Q
    ||||||||    
T  6904 atggtgtt 6911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 6e-29; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 347 - 450
Target Start/End: Original strand, 25438412 - 25438517
Alignment:
Q  347 tatgtttttaggtggtgatgtttattttggtggg-tgttgtcaggtagggtttgactaggtgttttgtgtgtaaggg-ttgttatggtgtttatttttcg 444  Q
    |||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||| || ||||| |||||| ||||||    
T  25438412 tatgtttttaggaggtgatgtttattttgggggggtgttgtcaggtagggtttgactaggtgttttgtgtgtaggggctttttatgatgtttacttttcg 25438511  T
Q  445 ggtgtt 450  Q
    ||||||    
T  25438512 ggtgtt 25438517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 328 - 435
Target Start/End: Complemental strand, 48058503 - 48058394
Alignment:
Q  328 tggtggtttggtgaaggggtatgttttt--aggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtaagggttg 425  Q
    ||||||||| | |||||||| |||||||  |||||||||||||||||||||||||||||||||||||||  | |||| |||||| | |||||| || ||     
T  48058503 tggtggtttcgagaaggggtctgtttttttaggtggtgatgtttattttggtgggtgttgtcaggtaggactcgactgggtgttctatgtgtagggtttt 48058404  T
Q  426 ttatggtgtt 435  Q
    ||| ||||||    
T  48058403 ttagggtgtt 48058394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 352 - 415
Target Start/End: Original strand, 9107413 - 9107475
Alignment:
Q  352 ttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgt 415  Q
    ||||||||||||||| ||||||||||||||||||  |||||| ||||| ||||||||| |||||    
T  9107413 ttttaggtggtgatgcttattttggtgggtgttg-aaggtagagtttggctaggtgttgtgtgt 9107475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 352 - 387
Target Start/End: Complemental strand, 28534323 - 28534288
Alignment:
Q  352 ttttaggtggtgatgtttattttggtgggtgttgtc 387  Q
    ||||||||||||||||||||||||||||||||||||    
T  28534323 ttttaggtggtgatgtttattttggtgggtgttgtc 28534288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 387
Target Start/End: Original strand, 23983491 - 23983526
Alignment:
Q  352 ttttaggtggtgatgtttattttggtgggtgttgtc 387  Q
    |||||||||||| |||||||||||||||||||||||    
T  23983491 ttttaggtggtggtgtttattttggtgggtgttgtc 23983526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 407 - 481
Target Start/End: Original strand, 25438673 - 25438748
Alignment:
Q  407 gttttgtgtgtaaggg-ttgttatggtgtttatttttcgggtgtttcgtttatatacggcgcctttcgtttgtatt 481  Q
    |||||||||||| ||| || |||||||||||| |||||||||||| ||  ||||||||| || | |||||||||||    
T  25438673 gttttgtgtgtaggggctttttatggtgtttacttttcgggtgttccgcctatatacggggcatatcgtttgtatt 25438748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 438 - 501
Target Start/End: Complemental strand, 48058406 - 48058343
Alignment:
Q  438 tttttcgggtgtttcgtttatatacggcgcctttcgtttgtattatctatttcaccagtctctg 501  Q
    ||||| ||||||| ||  |||||| | ||||||||||||||||| ||||||||||| |||||||    
T  48058406 tttttagggtgttccgcctatatatgacgcctttcgtttgtattctctatttcaccggtctctg 48058343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 328 - 366
Target Start/End: Complemental strand, 47456857 - 47456819
Alignment:
Q  328 tggtggtttggtgaaggggtatgtttttaggtggtgatg 366  Q
    ||||||||| |||||||||| ||||||||||||||||||    
T  47456857 tggtggtttcgtgaaggggtctgtttttaggtggtgatg 47456819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 9e-22; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 328 - 471
Target Start/End: Original strand, 19598882 - 19599031
Alignment:
Q  328 tggtggtttggtgaaggggtatgtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgac----taggtgttttgtgtg--taagg 421  Q
    ||||||||| |||||||  | | |||||||||||||||||| |||||| |||| ||||||||||||||||||||    |||||||||||||||  | |||    
T  19598882 tggtggtttcgtgaaggaatctatttttaggtggtgatgttcattttgatgggggttgtcaggtagggtttgaccatgtaggtgttttgtgtgcatgagg 19598981  T
Q  422 gttgttatggtgtttatttttcgggtgtttcgtttatatacggcgccttt 471  Q
     || | |||||||||| ||||| |||||| ||  ||||||||||||||||    
T  19598982 tttttcatggtgtttacttttcaggtgttccgcctatatacggcgccttt 19599031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 415
Target Start/End: Original strand, 16577546 - 16577608
Alignment:
Q  352 ttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgt 415  Q
    ||||||||| ||||||||||||||||||||||||  | ||||||| ||||||| |||| |||||    
T  16577546 ttttaggtgatgatgtttattttggtgggtgttg-aaagtagggtatgactagatgttgtgtgt 16577608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 387
Target Start/End: Original strand, 37200388 - 37200423
Alignment:
Q  352 ttttaggtggtgatgtttattttggtgggtgttgtc 387  Q
    ||||||||||||||||||||||| ||||||||||||    
T  37200388 ttttaggtggtgatgtttattttagtgggtgttgtc 37200423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 480
Target Start/End: Complemental strand, 50589015 - 50588964
Alignment:
Q  429 tggtgtttatttttcgggtgtttcgtttatatacggcgcctttcgtttgtat 480  Q
    ||||||||||| ||| |||||| ||  |||||||||||||||||||||||||    
T  50589015 tggtgtttattcttcaggtgttccgcctatatacggcgcctttcgtttgtat 50588964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 439 - 485
Target Start/End: Original strand, 17033942 - 17033988
Alignment:
Q  439 ttttcgggtgtttcgtttatatacggcgcctttcgtttgtattatct 485  Q
    |||||||||||| || ||||||||| ||||||| |||||||||||||    
T  17033942 ttttcgggtgttccgcttatatacgacgccttttgtttgtattatct 17033988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 385
Target Start/End: Complemental strand, 38548871 - 38548838
Alignment:
Q  352 ttttaggtggtgatgtttattttggtgggtgttg 385  Q
    |||||||||||||||||||||||||||| |||||    
T  38548871 ttttaggtggtgatgtttattttggtggatgttg 38548838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 426 - 479
Target Start/End: Complemental strand, 8862367 - 8862314
Alignment:
Q  426 ttatggtgtttatttttcgggtgtttcgtttatatacggcgcctttcgtttgta 479  Q
    |||||||||||||||||||| |||| ||| |||||||||||||||| |||||||    
T  8862367 ttatggtgtttatttttcggatgttccgtctatatacggcgccttttgtttgta 8862314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 387
Target Start/End: Complemental strand, 25184953 - 25184919
Alignment:
Q  353 tttaggtggtgatgtttattttggtgggtgttgtc 387  Q
    |||||||||||||||||||||||||||||||||||    
T  25184953 tttaggtggtgatgtttattttggtgggtgttgtc 25184919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 387
Target Start/End: Complemental strand, 30235926 - 30235891
Alignment:
Q  352 ttttaggtggtgatgtttattttggtgggtgttgtc 387  Q
    ||||||| ||||||||||||||||||||||||||||    
T  30235926 ttttagggggtgatgtttattttggtgggtgttgtc 30235891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 366 - 481
Target Start/End: Original strand, 47945974 - 47946090
Alignment:
Q  366 gtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtaagggtt---gttatggtgtttatttttcgggtgtttcgtttatatac 462  Q
    ||||||||||||||||| |||||  || ||||||| ||||| ||||||||||| || ||    ||||||| |||||||||| |||||| ||  |||||||    
T  47945974 gtttattttggtgggtg-tgtcatataaggtttgattaggtattttgtgtgtagggtttttctttatggtatttatttttcaggtgttccgcctatatac 47946072  T
Q  463 ggcgcctttcgtttgtatt 481  Q
    | |||| ||||||||||||    
T  47946073 gacgcc-ttcgtttgtatt 47946090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 387
Target Start/End: Complemental strand, 1652685 - 1652650
Alignment:
Q  352 ttttaggtggtgatgtttattttggtgggtgttgtc 387  Q
    ||||||| ||||||||||||||||||||||||||||    
T  1652685 ttttagggggtgatgtttattttggtgggtgttgtc 1652650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 383
Target Start/End: Original strand, 12086528 - 12086559
Alignment:
Q  352 ttttaggtggtgatgtttattttggtgggtgt 383  Q
    ||||||||||||||||||||||||||||||||    
T  12086528 ttttaggtggtgatgtttattttggtgggtgt 12086559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 387
Target Start/End: Complemental strand, 25594366 - 25594308
Alignment:
Q  328 tggtggtttggtgaaggggtatgtttttaggtggtgatgtttattttggtgggtgttgtc 387  Q
    |||| |||| ||||||| ||||||||| |||| |||||||||||| ||||||||||||||    
T  25594366 tggtcgttttgtgaaggagtatgtttt-aggtagtgatgtttattgtggtgggtgttgtc 25594308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 387
Target Start/End: Original strand, 27399231 - 27399266
Alignment:
Q  352 ttttaggtggtgatgtttattttggtgggtgttgtc 387  Q
    ||||||||| ||||||||||||||||||||||||||    
T  27399231 ttttaggtgatgatgtttattttggtgggtgttgtc 27399266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 40689552 - 40689505
Alignment:
Q  351 tttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttg 399  Q
    |||||| ||||||||||||||||| ||||||||||  ||||||||||||    
T  40689552 tttttaagtggtgatgtttatttttgtgggtgttg-aaggtagggtttg 40689505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1384 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold1384
Description:

Target: scaffold1384; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 426 - 476
Target Start/End: Complemental strand, 1397 - 1347
Alignment:
Q  426 ttatggtgtttatttttcgggtgtttcgtttatatacggcgcctttcgttt 476  Q
    |||||||||||||||||||||||||  |  |||||||||||||||| ||||    
T  1397 ttatggtgtttatttttcgggtgttctgcctatatacggcgccttttgttt 1347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 456 - 500
Target Start/End: Original strand, 58493 - 58537
Alignment:
Q  456 tatatacggcgcctttcgtttgtattatctatttcaccagtctct 500  Q
    |||||||||||||||| |||| |||||||| ||||||| ||||||    
T  58493 tatatacggcgccttttgtttctattatctgtttcaccggtctct 58537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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