View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3905_low_4 (Length: 492)
Name: NF3905_low_4
Description: NF3905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3905_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 478
Target Start/End: Original strand, 4721176 - 4721655
Alignment:
| Q |
1 |
gactcagcatcatgatcaaggtacaatctcattcacccatattttgcacacaatccacctctcgcacatacagacttgagggtgcacaattctcctctac |
100 |
Q |
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|||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4721176 |
gactcaacatcatgatcaaagtacaatctcattcacccattttttgcacacaatccacctctcgcacatacagacttgagggtgcacaattctcctctac |
4721275 |
T |
|
| Q |
101 |
tacggaagctgcttagcactgcgaaccaccgcaatagcagtcatcctcaccagagaaccaccagcatgtttcttcaatcttcaacgaacaaatcaaaagt |
200 |
Q |
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||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4721276 |
tactgaagctgcttagcactgtgaaccactgcaatagcagtcatcctcaccagagaaccaccagcatgtttcttcaatcttcaactaacaaatcaaaagt |
4721375 |
T |
|
| Q |
201 |
aaatgtcgaataataaaatggcacaacatgagaagatccagattaaagagtatgcaccatgacgacaaatggaatatcatggcgataacccaacataacc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4721376 |
aaatgtcgaataataaaatggcacaacatgagaagatccagattaaagagtatgcaccatgacgacaaatggaatatcatggcgataacccaacataaac |
4721475 |
T |
|
| Q |
301 |
acctaccaaattcaacatatatacaaatacgcacggacaagcaaaacagataggcatcttctctgctaaaaggaacgtatgaattaccaaaatctaagat |
400 |
Q |
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| T |
4721476 |
acctaccatattcaacatatatacaaatacgcacagacaagcaaaacagataggcatcttctctgctaaaaggaatgtatgaattaccaaaatctaagat |
4721575 |
T |
|
| Q |
401 |
aaggtattagtatcaaagtcgatataatga--tcaattacaaaatattaacattagatatgatgtattcatatagataag |
478 |
Q |
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| T |
4721576 |
aaggtattagtatcaaagtcgatgtagtgatgtcaattacaaaatattaacattagatatgatgtattcatctagataag |
4721655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 338 - 454
Target Start/End: Original strand, 54923478 - 54923599
Alignment:
| Q |
338 |
caagcaaaacagataggcatcttctctgctaaaaggaacgtatgaat---taccaaaatctaagataaggtattagtatcaaagtcgatataatga--tc |
432 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||| |||||||| ||| ||||||||| |||| | |||| || |
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| T |
54923478 |
caagcaaaacagataggtatcttctctgctaaaaggaaaatatgaattactaccaaaatcttagataaggaattggtatcaaagccgatgttatgatgtc |
54923577 |
T |
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| Q |
433 |
aattacaaaatattaacattag |
454 |
Q |
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||||| | ||||||||||||| |
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| T |
54923578 |
tattaccatatattaacattag |
54923599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 10597468 - 10597406
Alignment:
| Q |
1 |
gactcagcatcatgatcaaggtacaatctcattcacccatattttgcacacaatccacctctc |
63 |
Q |
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|||||||| ||| | |||||||||| | ||||||||||| |||| |||||||||||||||||| |
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| T |
10597468 |
gactcagcgtcacgctcaaggtacactttcattcacccaaatttcgcacacaatccacctctc |
10597406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 21923728 - 21923668
Alignment:
| Q |
18 |
aaggtacaatctcattcacccatattttgcacacaatccacctctcgcacatacagacttga |
79 |
Q |
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|||||||||||| |||||||||| ||||||| ||||||||||||| || |||| ||||||| |
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| T |
21923728 |
aaggtacaatctgattcacccat-ttttgcaaacaatccacctctttcatataccgacttga |
21923668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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