View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3905_low_6 (Length: 453)
Name: NF3905_low_6
Description: NF3905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3905_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 16 - 433
Target Start/End: Complemental strand, 33273707 - 33273290
Alignment:
| Q |
16 |
atcgatatcacatatttaacatacgacgtgttcaacaataaataatatacaaacatacctaacctaatttccctaaccttatagcgtggaacataatttt |
115 |
Q |
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| T |
33273707 |
atcgatatcacatatttaacatacgacgtgttcaacaataaataatatacaaacatacctaacctaatttccctaaccttatagcgtggaacataatttt |
33273608 |
T |
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| Q |
116 |
cccacacattcatttcatggcttccaagctctcatttctaaactctctcactcaaagaaagaaacaaaataatgctattaaagatgatcacatcaatgaa |
215 |
Q |
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| T |
33273607 |
cccacacattcatttcatggcttccaagctctcatttctaaactctctcactcaaagaaagaaacaaaataatgctattaaagatgatcacatcaatgaa |
33273508 |
T |
|
| Q |
216 |
gacatagccatagtgaaagcagctgcatgggcatggcatcaacgtggttctggatcatgtaatgaaggagaagctaattcaagtaatttttatgttacaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33273507 |
gacatagccatagtgaaagcagctgcatgggcatggcatcaacgtggttctggatcatgtaatgaaggagaagctaattcaagtaatttttatgttacaa |
33273408 |
T |
|
| Q |
316 |
ggagtaatattcatcgtgaaccaagaccttctcgttacaaattagaagcaatgagatcaatggtaaaggaagaaattcacaagaatgagaaatctctact |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
33273407 |
ggagtaatattcatcgtgaaccaagaccttctcgttacaaattagaagcaatgagatcaatggaaaaggaagaaattcacaagaaggagaaatctctact |
33273308 |
T |
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| Q |
416 |
tgatgcatatgaagttca |
433 |
Q |
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|||||||||||||||||| |
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| T |
33273307 |
tgatgcatatgaagttca |
33273290 |
T |
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