View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3905_low_8 (Length: 411)
Name: NF3905_low_8
Description: NF3905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3905_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 148 - 397
Target Start/End: Original strand, 47424403 - 47424652
Alignment:
| Q |
148 |
tacttcctaattacatccatccctatactttcatctgtggtagaccttcagagttctagtgttcgcatcgttaatgttatctctcgaacagttgctgctg |
247 |
Q |
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| T |
47424403 |
tacttcctaattacatccatccctatactttcatctgtggtagaccttcagagttctagtgttcgcatcgttaatgttatctctcgaacagttgctgctg |
47424502 |
T |
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| Q |
248 |
aacctaggttgcctcttctctagaagaaaaaaggattattcttagcataaccttgaaatcaattttcagcgaccttacgaaaaatcatctacaacactgc |
347 |
Q |
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| T |
47424503 |
aacctaggttgcctcttctctagaagaaaaaaggattattcttagcataaccttgaaatcaattttcaacgaccttacgaaaaatcatctacaacactgc |
47424602 |
T |
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| Q |
348 |
agaaaccatctaatctacgtacctgttgttgcacttctgttaatgctgat |
397 |
Q |
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| T |
47424603 |
agaaaccatctaatctacgtacctgttggtgcacttctgttaatgttgat |
47424652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 47424275 - 47424335
Alignment:
| Q |
20 |
tttaaaatcacatttggagaacaatctatcaaaatttaaccgttattgtacaatataaggt |
80 |
Q |
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| T |
47424275 |
tttaaaatcatatttggagaacaatctatcaaaatttaaccattattgtacaatataaggt |
47424335 |
T |
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