View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3906_high_10 (Length: 558)
Name: NF3906_high_10
Description: NF3906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3906_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 515; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 19 - 549
Target Start/End: Complemental strand, 34730294 - 34729764
Alignment:
| Q |
19 |
gtgggatggggactcgatatagttaaaggcagatttaagagcccgagtcttcagataattaaggtagcgtaccccttattaaggcatatgatacaaataa |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34730294 |
gtgggatggggactcgatatagttaaaggcagatttaagagcctgagtcttcagataattaaggtagcgtaccccttattaaggcatatgatacaaataa |
34730195 |
T |
|
| Q |
119 |
tgatcatgattgttcggaattgagtgtgattatgacgtgcctaagctgaagtctttactaactagatttgtatgagtatgccattcttgaaaacctgatt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34730194 |
tgatcatgattgttcggaattgagtgtgattatgacgtgcctaagctgaagtctttactaactagatttgtatgagtatgccattctttaaaacctgatt |
34730095 |
T |
|
| Q |
219 |
ttgtaataaaacaactttaaattttgctgttagtcgaaacatagatcaaagaacatccacttttagttgttttggaggtttgttgtagttaattgcaagt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34730094 |
ttgtaataaaacaactttaaattttgctgttagtcgaaacatagatcaaagaacatccacttttagttgttttgtaggtttgttgtagttaattgcaagt |
34729995 |
T |
|
| Q |
319 |
cattcatttctcaatgattcaaattttactgctctcttctaacttctaatatattttggttccgcagatggaaagcaacagatgagtccatttgctaatt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34729994 |
cattcatttctcaatgattcaaattttactgctctcttataacttctaatatattttggttccgcagatggaaagcaacagatgagtccatttgctaatt |
34729895 |
T |
|
| Q |
419 |
caaagactgctacaaatttagcctggcaaaacatgcagaacagcaagctcccccaagcaaaagattttctcttgaagcctgcaaaagacaacgctaacac |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34729894 |
caaagactgctacaaatttagcctggcaaaacatgcagaacagcaagctcccccaagcaaaagattttctcttgaagcctgcaaaagacaacgctaacac |
34729795 |
T |
|
| Q |
519 |
acaaggtactgtcactatgttttctgatgat |
549 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
34729794 |
acaaggtactgtcactatgttttctgatgat |
34729764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 149 - 548
Target Start/End: Complemental strand, 34726104 - 34725707
Alignment:
| Q |
149 |
tatgacgtgcctaagctgaagtctttactaactagatttgtatgagtatgccattcttgaaaacctgattttgtaataaaacaactttaaattttgctgt |
248 |
Q |
| |
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|||||||| ||||||| |||||||||||||||||||||||||||||| ||||||| | |||||||||||| |||| || ||||||| ||||| ||||| |
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| T |
34726104 |
tatgacgttcctaagccgaagtctttactaactagatttgtatgagtgcgccattcgttaaaacctgatttagtaaaaatacaacttcaaatt--gctgt |
34726007 |
T |
|
| Q |
249 |
tagtcgaaacatagatcaaagaacatccacttttagttgttttggaggtttgttgtagttaattgcaagtcattcatttctcaatgattcaaattttact |
348 |
Q |
| |
|
||||| |||| |||| || ||||||||||||||| |||| ||| |||||| || ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34726006 |
tagtcaaaacttagaccagagaacatccacttttggttgatttataggtttattatagttaattgcaagtcattcatttcacaatgattcaaattttact |
34725907 |
T |
|
| Q |
349 |
gctctcttctaacttctaatatattttggttccgcagatggaaagcaacagatgagtccatttgctaattcaaagactgctacaaatttagcctggcaaa |
448 |
Q |
| |
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| | ||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
34725906 |
gttgtcttctatcttctaatatattttggttctgcagatgggaagcaacagatgagtccatttactaattccaagactgctacaaatttagcctggcaaa |
34725807 |
T |
|
| Q |
449 |
acatgcagaacagcaagctcccccaagcaaaagattttctcttgaagcctgcaaaagacaacgctaacacacaaggtactgtcactatgttttctgatga |
548 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||| | |||||||||||||| ||||| |||| |
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| T |
34725806 |
acatgcacaacagcaagctcccccaagcaaaagattttctcttgaagccttcaaaagacaacattgacacaccaagtactgtcactatgctttctcatga |
34725707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 106 - 460
Target Start/End: Complemental strand, 38610732 - 38610387
Alignment:
| Q |
106 |
atgatacaaataatgatcatgattgttcggaattgagtgtgattatgacgtgcctaagctgaagtctttactaactagatttgtatgagtatgccattct |
205 |
Q |
| |
|
|||||||||||||| |||||||||||| ||| |||||||||||||||| || ||||||| |||||||||||||||||||||| || ||||||||||| || |
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| T |
38610732 |
atgatacaaataattatcatgattgtttggacttgagtgtgattatgatgttcctaagccgaagtctttactaactagatttttacgagtatgccat-ct |
38610634 |
T |
|
| Q |
206 |
tgaaaacctgattttgtaataaaacaactttaaattttgctgttagtcgaaacatagatcaaagaacatccacttttagttgttttggaggtttgttgta |
305 |
Q |
| |
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| |||||||||||| |||| || ||||||| | |||||| |||||||| ||| |||| ||||||| |||||||||| ||||||||| || || |
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| T |
38610633 |
ttaaaacctgatttagtaaaaatacaacttgacattttgttgttagtcaaaagttagaccaaagaagatccacttttggttgttttg--------ttata |
38610542 |
T |
|
| Q |
306 |
gttaattgcaagtcattcatttctcaatgattcaaattttactgctctcttctaacttctaatatattttggttccgcagatggaaagcaacagatgagt |
405 |
Q |
| |
|
||||||||||||||||||||||| | ||||| ||||||||||| |||||||| |||||||||||||| ||||| |||||||||||||||||||||||| |
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|
| T |
38610541 |
gttaattgcaagtcattcatttcgcgatgatgcaaattttactattctcttctgtcttctaatatatttcggttctgcagatggaaagcaacagatgagt |
38610442 |
T |
|
| Q |
406 |
ccatttgctaattcaaagactgctacaaatttagcctggcaaaacatgcagaaca |
460 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
38610441 |
ccatttgctaattcaaagactgctacatatttagcctggcaaaacatgcacaaca |
38610387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 106 - 460
Target Start/End: Complemental strand, 38795517 - 38795172
Alignment:
| Q |
106 |
atgatacaaataatgatcatgattgttcggaattgagtgtgattatgacgtgcctaagctgaagtctttactaactagatttgtatgagtatgccattct |
205 |
Q |
| |
|
|||||||||||||| |||||||||||| ||| |||||||||||||||| || ||||||| |||||||||||||||||||||| || ||||||||||| || |
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|
| T |
38795517 |
atgatacaaataattatcatgattgtttggacttgagtgtgattatgatgttcctaagccgaagtctttactaactagatttttacgagtatgccat-ct |
38795419 |
T |
|
| Q |
206 |
tgaaaacctgattttgtaataaaacaactttaaattttgctgttagtcgaaacatagatcaaagaacatccacttttagttgttttggaggtttgttgta |
305 |
Q |
| |
|
| |||||||||||| |||| || ||||||| | |||||| |||||||| ||| |||| ||||||| |||||||||| ||||||||| || || |
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| T |
38795418 |
ttaaaacctgatttagtaaaaatacaacttgacattttgttgttagtcaaaagttagaccaaagaagatccacttttggttgttttg--------ttata |
38795327 |
T |
|
| Q |
306 |
gttaattgcaagtcattcatttctcaatgattcaaattttactgctctcttctaacttctaatatattttggttccgcagatggaaagcaacagatgagt |
405 |
Q |
| |
|
||||||||||||||||||||||| | || || ||||||||||| |||||||| |||||||||||||| ||||| |||||||||||||||||||||||| |
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|
| T |
38795326 |
gttaattgcaagtcattcatttcgcgattatgcaaattttactattctcttctgtcttctaatatatttcggttctgcagatggaaagcaacagatgagt |
38795227 |
T |
|
| Q |
406 |
ccatttgctaattcaaagactgctacaaatttagcctggcaaaacatgcagaaca |
460 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
38795226 |
ccatttgctaattcaaagactgctacatatttagcctggcaaaacatgcacaaca |
38795172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 248 - 510
Target Start/End: Complemental strand, 34720765 - 34720505
Alignment:
| Q |
248 |
ttagtcgaaacatagatcaaagaacatccacttttagttgttttggaggtttgttgtagttaattgcaagtcattcatttctcaatgattcaaattttac |
347 |
Q |
| |
|
|||||| |||| || | |||||| || ||| ||||||||| ||| | |||| || |||||| || ||| ||||||||||| |||| || || ||||||| |
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|
| T |
34720765 |
ttagtcaaaacttataccaaagagcagccaattttagttgattt--atgtttattatagttacttacaaatcattcatttcacaatcatgcacattttac |
34720668 |
T |
|
| Q |
348 |
tgctctcttctaacttctaatatattttggttccgcagatggaaagcaacagatgagtccatttgctaattcaaagactgctacaaatttagcctggcaa |
447 |
Q |
| |
|
||||||| || ||||||||||| ||| |||| |||||||| ||||||||||||| ||||||||| ||||||||||||||| ||||||||||| |||| |
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|
| T |
34720667 |
cgctctctcttatcttctaatatagtttagttctgcagatgggaagcaacagatgaatccatttgcctattcaaagactgctataaatttagccttgcaa |
34720568 |
T |
|
| Q |
448 |
aacatgcagaacagcaagctcccccaagcaaaagattttctcttgaagcctgcaaaagacaac |
510 |
Q |
| |
|
||||| || |||||| || |||||| | ||||||||||| ||||||| |||||||| |||| |
|
|
| T |
34720567 |
aacatacaaaacagcgagttcccccgaataaaagattttcccttgaagtatgcaaaagtcaac |
34720505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 406 - 486
Target Start/End: Original strand, 38496083 - 38496163
Alignment:
| Q |
406 |
ccatttgctaattcaaagactgctacaaatttagcctggcaaaacatgcagaacagcaagctcccccaagcaaaagatttt |
486 |
Q |
| |
|
||||||||| | |||||| | || |||||||||| |||| | |||||| |||||||||||||||||| | ||||||||| |
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|
| T |
38496083 |
ccatttgcttttccaaagaatacttcaaatttagcatggccagacatgcccaacagcaagctcccccaaaccaaagatttt |
38496163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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