View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3906_high_12 (Length: 489)
Name: NF3906_high_12
Description: NF3906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3906_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 72 - 472
Target Start/End: Original strand, 33948650 - 33949050
Alignment:
| Q |
72 |
ggtaacatcttctggtaggaaaggaagcaggtctttgtctcccttaagagtctcagacatcatagaaaactcagaagataaagatgtttctgtttcttct |
171 |
Q |
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| T |
33948650 |
ggtaacatcttctggtaggaaaggaagcaggtctttgtctcccttaagagtctcagacatcatagaaaactcagaagataaagatgtttctgtttcttct |
33948749 |
T |
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| Q |
172 |
tccacaagtaacaacgtgaaatcgttcttgtctttcactaaaggttatagaaaatggaagataagagattttcttttatttcgaagtgcttctgaaggaa |
271 |
Q |
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| T |
33948750 |
tccacaagtaacaacgtgaaatcgttcttgtctttcactaaaggttatagaaaatggaagataagagattttcttttatttcgaagtgcttctgaaggaa |
33948849 |
T |
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| Q |
272 |
gagctaatgaaaaagatcctttgagaaagtacacagctttgtctaagaaaagtgttgtggaagatgaagttaggaattctagtttccggtctaatgagag |
371 |
Q |
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| T |
33948850 |
gagctaatgaaaaagatcctttgagaaagtacacagctttgtctaagaaaagtgttgtggaagatgaagttaggaattctagtttccggtctaatgagag |
33948949 |
T |
|
| Q |
372 |
ttccggttcattttcgaggcggcgtggaccggtttcggctcatgaaattcattatacaataaaccgggctgttactgaggagatgaagaagagaacattc |
471 |
Q |
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| T |
33948950 |
ttccggttcattttcgaggcggcgtggaccggtttcggctcatgaaattcattatacaataaaccgggctgttactgaggagatgaagaagagaacattc |
33949049 |
T |
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| Q |
472 |
t |
472 |
Q |
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| T |
33949050 |
t |
33949050 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 274
Target Start/End: Original strand, 12258090 - 12258159
Alignment:
| Q |
205 |
ttcactaaaggttatagaaaatggaagataagagattttcttttatttcgaagtgcttctgaaggaagag |
274 |
Q |
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| T |
12258090 |
ttcacaaaagggtatagaaaatggagattcaaagattttctactatttcgaagtgcttcagaaggaagag |
12258159 |
T |
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