View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3906_high_15 (Length: 453)
Name: NF3906_high_15
Description: NF3906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3906_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 67 - 310
Target Start/End: Complemental strand, 4429341 - 4429100
Alignment:
| Q |
67 |
ataaaaccactcaatttcactctctctctccaaacgcacatttttcctcatcaaaccacccctccaacgtccttggttgataaaaccaaactattacacc |
166 |
Q |
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| T |
4429341 |
ataacaccactcaatttcactctctctc--caaacgcacatttttcctcatcaaaccacccttccaacgtccttggttgataaaaccaaactattacacc |
4429244 |
T |
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| Q |
167 |
cactcctctcatatcaatcatctcaccctcttagtttccctcacgtgctcgattttagtcaactttgtgtacttcaattaggacatgattacattattca |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
4429243 |
cactcctctcatatcaatcatctcaccctcttagtttccctcacgtgctcgattttagtcaactttgtgtacttcaattagtaaatgattacattattca |
4429144 |
T |
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| Q |
267 |
cagcgaacaaagattgccctatcactatatttaccccgaaaaga |
310 |
Q |
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| T |
4429143 |
cagcgaacaaagattgccctatcactatatttaccccgaaaaga |
4429100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 147 - 335
Target Start/End: Complemental strand, 4440502 - 4440314
Alignment:
| Q |
147 |
taaaaccaaactattacacccactcctctcatatcaatcatctcaccctcttagtttccctcacgtgctcgattttagtcaactttgtgtacttcaatta |
246 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||| || ||||||||| |||||| ||||||| ||||| |
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| T |
4440502 |
taaaaccaaactcttacacccactcctctcatatcaatcatctcatcctcttcatttccctcacgctcttgattttagtgaactttatgtacttgaatta |
4440403 |
T |
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| Q |
247 |
ggacatgattacattattcacagcgaacaaagattgccctatcactatatttaccccgaaaagatcgttgctgtcacgtgcaaagaaaa |
335 |
Q |
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| T |
4440402 |
ggaaatgattacattattgacagcgaacaaatattaccatgtgactatgtttaccctgaaaagatcgttgctgtcacgtgcaaagaaaa |
4440314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 348 - 453
Target Start/End: Complemental strand, 4429060 - 4428950
Alignment:
| Q |
348 |
tgccccaaaatcaatattggtgaaatgcaacggagatgaacatt-----ggaatgtgattcctgatatgtctatgtacttgggagacatctgcattttca |
442 |
Q |
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| T |
4429060 |
tgccccaaaatcaatattggttaactgcaacggagatgaacattacattggaatgtgattcctgatatgtctatgtacttgggagacatctgcattttca |
4428961 |
T |
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| Q |
443 |
aaaggcggcct |
453 |
Q |
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| T |
4428960 |
aaaggcggcct |
4428950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 4440654 - 4440527
Alignment:
| Q |
18 |
attcccaatctaaccctcaaattcccactccgctctcaatctcccaccaataaaaccactcaatttcactctctctctccaaacgcacatttttcctcat |
117 |
Q |
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|||||||||||||||||||| || |||| || || ||||||| ||| ||| || ||||||||||||||||||| ||||||||||| | || |||||||| |
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| T |
4440654 |
attcccaatctaaccctcaagtttccacacccctatcaatcttccatcaacaacaccactcaatttcactctc--tctccaaacgctctttcttcctcat |
4440557 |
T |
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| Q |
118 |
caaaccacccctccaacgtccttggttgat |
147 |
Q |
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| T |
4440556 |
caaaccaccacttcaacgcccttggttgat |
4440527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 453
Target Start/End: Complemental strand, 4440256 - 4440178
Alignment:
| Q |
375 |
caacggagatgaacattggaatgtgattcctgatatgtctatgtacttgggagacatctgcattttcaaaaggcggcct |
453 |
Q |
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||||||||||||| |||| ||||||| ||||||||||||| |||||| ||||||||| |||||||| |||||||| |
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| T |
4440256 |
caacggagatgaaatttggtgtgtgattactgatatgtctataaacttggttgacatctgcgttttcaaagggcggcct |
4440178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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