View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3906_high_16 (Length: 452)
Name: NF3906_high_16
Description: NF3906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3906_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 11 - 408
Target Start/End: Complemental strand, 3497166 - 3496769
Alignment:
| Q |
11 |
cataggccacatatgagtagattctattctatacaagttcttaacacccttggtgagattcattataataacataacatagttttaacacattgaatatc |
110 |
Q |
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| T |
3497166 |
cataggccacatatgagtagattctattctatacaagttcttaacacccttggtgagattcattataataacataacatagttttaacacattgaatatc |
3497067 |
T |
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| Q |
111 |
aagtggtaaaatgtgtaaaaatagatgataaaggagaaaatgcacagaaagaaagaccttatcggctaatccttgagcagcagctagagcattagctctt |
210 |
Q |
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| T |
3497066 |
aagtggtaaaatgtgtaaaaatagatgataaaggagaaaatgcacagaaagaaagaccttatcggctaatccttgagcagcagctagagcattagctctt |
3496967 |
T |
|
| Q |
211 |
tcagcttgaacagggctgagagtgatgcctacacagtttgccccaaatttcttggccaggtaccttgaactgccccctatgccacacccaacatcaacta |
310 |
Q |
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| T |
3496966 |
tcagcttgaacagggctgagagtgatgcctacacagtttgccccaaatttcttggccaggtaccttgaactgccccctatgccacacccaacatcaacta |
3496867 |
T |
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| Q |
311 |
cactctttggccattttgattgatcctctaagcatacatgcatcaataacagcaggtagtcagtactagccagtccgatcaggagaaaatttaccagc |
408 |
Q |
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| T |
3496866 |
cactctttggccattttgattgatcctctgagcatacatgcatcaataacagcaggtagtcagtactagccagtccgatcaggataaaatttaccagc |
3496769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 178 - 317
Target Start/End: Complemental strand, 12822293 - 12822154
Alignment:
| Q |
178 |
aatccttgagcagcagctagagcattagctctttcagcttgaacagggctgagagtgatgcctacacagtttgccccaaatttcttggccaggtaccttg |
277 |
Q |
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||||||||||||| ||| |||| ||| |||||||||||||||||||| || ||||||||||| |||||| |||| || |||||||||| | ||| | | |
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| T |
12822293 |
aatccttgagcagtagcaagagtatttgctctttcagcttgaacaggactcagagtgatgcccacacagcttgctccgtatttcttggctaagtatcgag |
12822194 |
T |
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| Q |
278 |
aactgccccctatgccacacccaacatcaactacactctt |
317 |
Q |
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| T |
12822193 |
aggtgccccctatgccacacccaacatcaattatactctt |
12822154 |
T |
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