View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3906_high_2 (Length: 798)
Name: NF3906_high_2
Description: NF3906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3906_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 510; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 253 - 790
Target Start/End: Complemental strand, 50558918 - 50558381
Alignment:
| Q |
253 |
gattcaatggttttacactcatcttgcttactcctaaagcagaatttcaataatcgtcttttctcggtgtttttgtgtagataccatgctattcataagg |
352 |
Q |
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| T |
50558918 |
gattcaatggttttacactcatcttgcttactcctaaagcagaatttcaataatcgtcttttctcggtttttttgtgtagataccatgctattcataagg |
50558819 |
T |
|
| Q |
353 |
aggtctatgattggtttgatataagttttgataaatttgggcgaacctcttctcctgagcaaactgaaatttgccagtcaattttccaaaagatatttga |
452 |
Q |
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| T |
50558818 |
aggtctacgattggtttgatataagttttgataaatttgggcgaacctcttctcctgagcaaactgaaatttgccagtcaattttccaaaagatatttga |
50558719 |
T |
|
| Q |
453 |
taacaaatggatctccgagagaacaatggagcaggtgttcaattttctatttatttgacattgttcctctctcttgtttagttgaaaatttcagaaaggt |
552 |
Q |
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| T |
50558718 |
taacaaatggatctccgagagaacaatggagcaggtgttcaattttctatttatttgacattgttcctctctcttgtttagttgaaaatttcagaaaggt |
50558619 |
T |
|
| Q |
553 |
tctttattacgctttactaaaatgcttatcaaatttcagctttactgcaatacatgcgagaggttcttgtgtgatcggcttgtggaaggtgcctgtccaa |
652 |
Q |
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| T |
50558618 |
tctttattacactttactaaaatgcttatcaaatttcagctttactgcgatacctgcgagaggttcttgtgtgatcggcttgtggaaggtacctgtccaa |
50558519 |
T |
|
| Q |
653 |
ctcctgggtgtgagtatggttctgcacgaggtgaccaatgcgataagtgtggaaagcttctcaatcctacagagttgaagaatcctaggtgcaaggtagc |
752 |
Q |
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| T |
50558518 |
ctcctgagtgtgagtatggttctgcacgaggtgaccaatgcgataagtgtggaaagcttctcaatcctacagagttgaagaatcctaggtgcaaggtagc |
50558419 |
T |
|
| Q |
753 |
aaccctctccctaaatttttgctctatgtttctgtgct |
790 |
Q |
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| T |
50558418 |
aaccctctccctaaatttttgctctatgtttctgtgct |
50558381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 50559170 - 50558949
Alignment:
| Q |
1 |
caatcacaattcgtttcgtttgattctatttaaacaatttgttggttccgattctgattttgaacaggtgtattgagtgccgacgtttatgctcgttact |
100 |
Q |
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| T |
50559170 |
caatcgcaattcgtctcgtttgattctatttaaacaatttgttggttccgattctgattttgaacaggtgtgttgagtgccgacgtttatgctcgttact |
50559071 |
T |
|
| Q |
101 |
gtcgacttaggggttacaatgttctctacatttgtggtactgatgagtatggtactccaattattactagagctttggaacagaattgttctcctaaaca |
200 |
Q |
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| T |
50559070 |
gtcgacttaggggttacaatgttctctacatttgtggtactgatgagtatggtactccaattgttactagagctttggaacagaattgttctcctaaaca |
50558971 |
T |
|
| Q |
201 |
aattgctgacaagtactatcaa |
222 |
Q |
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| T |
50558970 |
aattgctgacaagtactatcaa |
50558949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 330 - 443
Target Start/End: Complemental strand, 29773538 - 29773425
Alignment:
| Q |
330 |
tagataccatgctattcataaggaggtctatgattggtttgatataagttttgataaatttgggcgaacctcttctcctgagcaaactgaaatttgccag |
429 |
Q |
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|||||||||||||||||| ||||| ||||| |||||||| ||||||| |||||| ||||||| || || ||||| ||||||||||||||| | ||||| |
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| T |
29773538 |
tagataccatgctattcacaaggaagtctacgattggttcaatataagctttgatgaatttggacgtacttcttcccctgagcaaactgaagtgtgccaa |
29773439 |
T |
|
| Q |
430 |
tcaattttccaaaa |
443 |
Q |
| |
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|||||||| |||| |
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| T |
29773438 |
gcaattttcaaaaa |
29773425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 583 - 751
Target Start/End: Complemental strand, 29773236 - 29773068
Alignment:
| Q |
583 |
aaatttcagctttactgcaatacatgcgagaggttcttgtgtgatcggcttgtggaaggtgcctgtccaactcctgggtgtgagtatggttctgcacgag |
682 |
Q |
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|||||||||||||||||| |||||||| | |||||||| ||||| |||||||| ||| |||| |||| ||| ||||||||||||| |||||| ||| |
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| T |
29773236 |
aaatttcagctttactgcgatacatgcaaaaggttcttagccgatcgacttgtggagggtacctgcccaattccagggtgtgagtatgattctgccagag |
29773137 |
T |
|
| Q |
683 |
gtgaccaatgcgataagtgtggaaagcttctcaatcctacagagttgaagaatcctaggtgcaaggtag |
751 |
Q |
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| || || || || || ||||| || ||||| ||||| ||||| ||||||| ||| | ||||||||||| |
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| T |
29773136 |
gggatcagtgtgagaactgtggcaaccttctaaatccgacagaattgaagattcccaagtgcaaggtag |
29773068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 215
Target Start/End: Complemental strand, 29774798 - 29774648
Alignment:
| Q |
65 |
caggtgtattgagtgccgacgtttatgctcgttactgtcgacttaggggttacaatgttctctacatttgtggtactgatgagtatggtactccaattat |
164 |
Q |
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||||||| |||||||| || || | |||||| |||||||| |||||||||||||||| | ||||| |||||||| ||||||||||| ||| ||| |
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| T |
29774798 |
caggtgtgttgagtgctgatgtgtttgctcgatactgtcgtcttaggggttacaatgcgatttacatctgtggtaccgatgagtatgggactgcaacgga |
29774699 |
T |
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| Q |
165 |
tactagagctttggaacagaattgttctcctaaacaaattgctgacaagta |
215 |
Q |
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|||| ||| |||||| ||||||||||||| ||| | ||| ||||||||| |
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| T |
29774698 |
gactaaagcattggaagagaattgttctcccaaagagatttgtgacaagta |
29774648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 408 - 493
Target Start/End: Complemental strand, 50569065 - 50568978
Alignment:
| Q |
408 |
tgagcaaactgaaatttgccagtcaattttccaaaagata--tttgataacaaatggatctccgagagaacaatggagcaggtgttca |
493 |
Q |
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| T |
50569065 |
tgagctaactgaagtttgcaaggaaattttcaaaaagataaatttgataacaaatggctatccgagagaaccgtggagcaggtgttca |
50568978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 323 - 356
Target Start/End: Complemental strand, 50569104 - 50569071
Alignment:
| Q |
323 |
ttttgtgtagataccatgctattcataaggaggt |
356 |
Q |
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||||||||||||||||||||||| |||||||||| |
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| T |
50569104 |
ttttgtgtagataccatgctattaataaggaggt |
50569071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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