View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3906_high_20 (Length: 423)
Name: NF3906_high_20
Description: NF3906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3906_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 42913215 - 42913492
Alignment:
| Q |
1 |
gttacattaggtaaattcaaatgggtcatcacatcacccatacatttagctactggtagtaagtactatagctattttattacaccactaaacaagtaac |
100 |
Q |
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| T |
42913215 |
gttacattaggtaaattcaaatgggtcatcacatcacccatacatttagctactagtagtaagtactatagctattttattacaccactaaacaagtaac |
42913314 |
T |
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| Q |
101 |
aagaagaagacatt---caacaagacataatgaaacttaacttaaagtgattaatgtaattaaccactctctctaattaaacacttccataaacttcaca |
197 |
Q |
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| T |
42913315 |
aagaaaaagacattaaacaacaagacatagtgaaacttaacttaaagtgattaatgtaattaaccactctctctaattaaacacttccataaacttcaca |
42913414 |
T |
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| Q |
198 |
cattttctccttattcactcttctcaattggagcctcttcttcattcttctcaatttttgcatcattgttggtgatca |
275 |
Q |
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| T |
42913415 |
cattttctccttattcactcttctcaattggagcctcttcttcattcttctcaatttttgcatcattgttggtgatca |
42913492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 358 - 406
Target Start/End: Original strand, 42913575 - 42913623
Alignment:
| Q |
358 |
aacattgtccttagtttcaggctcagctaccacattctcatccttaaca |
406 |
Q |
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| T |
42913575 |
aacattgtccttagtttcaggctcagctaccacattctcatccttaaca |
42913623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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