View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3906_high_32 (Length: 336)
Name: NF3906_high_32
Description: NF3906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3906_high_32 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 7 - 323
Target Start/End: Original strand, 21637073 - 21637388
Alignment:
| Q |
7 |
ccactacctttccttatgcttagtaatcaatcaccaaccaaaaataactcgaggattaggagatgacatgattttagttatatataccaaccttgacttt |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21637073 |
ccactacctttccttatgcttagtaatcaatcaccaaccaaaaatgactcgaggattaggagatgacatgattttagttatatataccaaccttgacttt |
21637172 |
T |
|
| Q |
107 |
cttcgagagtttgatagatcctcctcaagtgcataggcggcgatcatcttttcaacttatataaccattaagaaattattgtaaattttagttactcagt |
206 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||| | ||||||||||||||||||||||||| || |
|
|
| T |
21637173 |
cttcaagagtttgatagatcatcctcaagtgcataggcggcgatcaacttttcaacttatataatcatacaaaaattattgtaaattttagttactcggt |
21637272 |
T |
|
| Q |
207 |
gag-taagtaannnnnnnnnnnnnnnatttgaatgggattaaagatctcatgc------atgttgtccacaaattttaaatcaaccgatatatttgtctc |
299 |
Q |
| |
|
||| ||||||| ||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
21637273 |
gagttaagtaa-------ttttttttattagaatgggattaaagatctcatgcatgttgatgttgtccacaaaatttaaatcaaccgatata-ttgtcta |
21637364 |
T |
|
| Q |
300 |
tataagtagatttggctcaactct |
323 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
21637365 |
tataagtagatttggctcaactct |
21637388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University