View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3906_high_37 (Length: 310)
Name: NF3906_high_37
Description: NF3906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3906_high_37 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 13115237 - 13115536
Alignment:
| Q |
1 |
ctagcaatttttctctgctgcttccacttgtcaccatcaacagcaaaaattccctcaccaagaagatcggtaataatatctttattatacttacctttag |
100 |
Q |
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| T |
13115237 |
ctagcaatttttctctgctgcttccacttgtcaccatcaacagcaaaaatcccctcaccaagaagatcagtaataatatctttattatacttacctttag |
13115336 |
T |
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| Q |
101 |
aatacttatcaaaattggttttcaatatatgttcaatatttctcacatctattgtgtacaactcactttgatttggtgcaagaagcctcatagttggatg |
200 |
Q |
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| T |
13115337 |
aatacttatcaaaattggttttcaatatatgttcaatatttctcacatctattgtgtacaactcactttgatttggtgcaagaagcctcatagttggatg |
13115436 |
T |
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| Q |
201 |
agtttttgctaattgagcatggtaatcatggagtttcttgaagttgaaaagttggttgaacactgtgcctttcacaggtgcatattttgggtcccctatg |
300 |
Q |
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| T |
13115437 |
agtttttgctaattgagcatggtaatcatggagtttcttgaagttgaaaagttggttgaacactgtgcctttcacaggtgcatattttgggtcccctatg |
13115536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 18670201 - 18669902
Alignment:
| Q |
1 |
ctagcaatttttctctgctgcttccacttgtcaccatcaacagcaaaaattccctcaccaagaagatcggtaataatatctttattatacttacctttag |
100 |
Q |
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||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||| ||||||||||||||||| |
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| T |
18670201 |
ctagcaattttcctctgttgcttccacttgtcaccatcaacagcaaaaatcccctcaccaaaaagatcagtaataatatcttgattatacttacctttag |
18670102 |
T |
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| Q |
101 |
aatacttatcaaaattggttttcaatatatgttcaatatttctcacatctattgtgtacaactcactttgatttggtgcaagaagcctcatagttggatg |
200 |
Q |
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| T |
18670101 |
aatacttatcaaaattggttttcaatatatgttcaatatttctcacatctattctgtacaactcactttgatttggtgcaagaagcctcatagttggatg |
18670002 |
T |
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| Q |
201 |
agtttttgctaattgagcatggtaatcatggagtttcttgaagttgaaaagttggttgaacactgtgcctttcacaggtgcatattttgggtcccctatg |
300 |
Q |
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| T |
18670001 |
agtttttgctaattgagcatggtaatcatggagtttcttgaagtagaatagttggttgaacactgtgccttttacaggtgcatattttgggtcccctatg |
18669902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 13 - 299
Target Start/End: Original strand, 13105775 - 13106061
Alignment:
| Q |
13 |
ctctgctgcttccacttgtcaccatcaacagcaaaaattccctcaccaagaagatcggtaataatatctttattatacttacctttagaatacttatcaa |
112 |
Q |
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| T |
13105775 |
ctctgctgcttccacttgttaccatcaacaacaaaaatcccctcaccaaaaagatctgtcataatatcttgactatacttacctctagaatatttatcaa |
13105874 |
T |
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| Q |
113 |
aattggttttcaatatatgttcaatatttctcacatctattgtgtacaactcactttgatttggtgcaagaagcctcatagttggatgagtttttgctaa |
212 |
Q |
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| T |
13105875 |
agtttgttttcaatacatgttcaatatttctcacatctattgtgtacaactcactatgatttggtgcaagaagtctataagttggatgaattttggccaa |
13105974 |
T |
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| Q |
213 |
ttgagcatggtaatcatggagtttcttgaagttgaaaagttggttgaacactgtgcctttcacaggtgcatattttgggtcccctat |
299 |
Q |
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| T |
13105975 |
ttgagcatggtaatcatagagtttcttgaagtagaaaagttggttgaacactgtgcctttaacaggtgtatactttgagtcccctat |
13106061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 4 - 299
Target Start/End: Original strand, 13099971 - 13100269
Alignment:
| Q |
4 |
gcaatttttctctgctgcttccacttgtcaccatcaacagcaaaaattccctcaccaagaagatcggtaataatatctttattatacttacctttagaat |
103 |
Q |
| |
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|||| ||| |||||||| ||||||||||||||||||| |||||||| |||||||||| |||||| || |||| ||||| | ||||||||||| |||||| |
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| T |
13099971 |
gcaactttcctctgctgtctccacttgtcaccatcaacggcaaaaatcccctcaccaaaaagatctgtcataacatcttgactatacttacctctagaat |
13100070 |
T |
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| Q |
104 |
acttatcaaaattggttttcaatatatgttcaatatttctcacatctattgtgtacaac---tcactttgatttggtgcaagaagcctcatagttggatg |
200 |
Q |
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| T |
13100071 |
atttatcaaaattggttttcaatacatgttcaatatttctcacatctattgtgtacaactgatcactttgatttggtgcaagaagtctataagttggatg |
13100170 |
T |
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| Q |
201 |
agtttttgctaattgagcatggtaatcatggagtttcttgaagttgaaaagttggttgaacactgtgcctttcacaggtgcatattttgggtcccctat |
299 |
Q |
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| T |
13100171 |
aattttggccatttgagcttggtaatcatagagtttgttgaagtagaaaagatggttgaacactgtgcctttaacaggtgcatattttgggtcccctat |
13100269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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