View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3906_high_4 (Length: 667)

Name: NF3906_high_4
Description: NF3906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3906_high_4
NF3906_high_4
[»] chr3 (29 HSPs)
chr3 (14-287)||(20810692-20810964)
chr3 (4-267)||(26962368-26962632)
chr3 (2-302)||(13022333-13022616)
chr3 (19-306)||(33088852-33089113)
chr3 (325-457)||(53120181-53120314)
chr3 (321-457)||(33088616-33088753)
chr3 (321-457)||(13022705-13022842)
chr3 (321-457)||(38436270-38436407)
chr3 (1-141)||(53119835-53119976)
chr3 (1-104)||(38436643-38436746)
chr3 (321-429)||(20811068-20811177)
chr3 (324-457)||(11777233-11777360)
chr3 (2-71)||(21494027-21494096)
chr3 (321-390)||(26962680-26962749)
chr3 (2-142)||(6025471-6025609)
chr3 (243-305)||(53120007-53120071)
chr3 (208-292)||(2617052-2617135)
chr3 (236-287)||(38436514-38436566)
chr3 (2-72)||(1740826-1740896)
chr3 (2-70)||(25023640-25023708)
chr3 (326-457)||(26929373-26929498)
chr3 (6-68)||(47408698-47408761)
chr3 (2-70)||(795122-795190)
chr3 (2-72)||(26928916-26928980)
chr3 (284-319)||(30341464-30341499)
chr3 (173-267)||(1740644-1740738)
chr3 (328-390)||(6025740-6025802)
chr3 (417-457)||(3448719-3448759)
chr3 (238-274)||(21493919-21493955)
[»] chr4 (19 HSPs)
chr4 (1-274)||(10120095-10120369)
chr4 (2-280)||(24490340-24490611)
chr4 (1-136)||(10120461-10120597)
chr4 (321-458)||(10119805-10119943)
chr4 (321-457)||(24490750-24490882)
chr4 (2-157)||(30564044-30564200)
chr4 (2-104)||(10318460-10318562)
chr4 (321-457)||(653644-653782)
chr4 (214-285)||(653512-653582)
chr4 (522-653)||(4330409-4330540)
chr4 (507-628)||(25567946-25568067)
chr4 (35-91)||(653382-653438)
chr4 (522-628)||(4342887-4342993)
chr4 (547-652)||(4126413-4126518)
chr4 (208-267)||(19725594-19725653)
chr4 (10-64)||(3258651-3258705)
chr4 (361-457)||(8082773-8082862)
chr4 (326-391)||(10318245-10318310)
chr4 (36-73)||(15498977-15499014)
[»] chr1 (23 HSPs)
chr1 (1-286)||(26650669-26650954)
chr1 (321-457)||(31289411-31289547)
chr1 (321-457)||(13891461-13891598)
chr1 (318-458)||(39746673-39746814)
chr1 (321-457)||(38734782-38734919)
chr1 (321-457)||(14582404-14582541)
chr1 (321-457)||(26650428-26650564)
chr1 (16-140)||(13891133-13891258)
chr1 (217-305)||(38734602-38734693)
chr1 (364-457)||(5602170-5602264)
chr1 (49-141)||(19406519-19406611)
chr1 (2-71)||(39747002-39747071)
chr1 (321-402)||(10106697-10106778)
chr1 (326-457)||(12179363-12179494)
chr1 (130-175)||(39746947-39746992)
chr1 (202-246)||(19406466-19406510)
chr1 (237-318)||(10106531-10106620)
chr1 (1-59)||(19422599-19422657)
chr1 (262-308)||(39746899-39746945)
chr1 (35-91)||(10106441-10106496)
chr1 (237-267)||(14724812-14724842)
chr1 (321-355)||(19406284-19406318)
chr1 (423-459)||(10106801-10106837)
[»] chr7 (21 HSPs)
chr7 (1-267)||(33226654-33226911)
chr7 (35-287)||(24528696-24528940)
chr7 (2-149)||(9973770-9973917)
chr7 (321-457)||(9973925-9974062)
chr7 (321-457)||(33226975-33227113)
chr7 (321-457)||(7357990-7358127)
chr7 (321-457)||(24529046-24529183)
chr7 (325-457)||(28291842-28291975)
chr7 (215-306)||(28292078-28292171)
chr7 (117-178)||(28292173-28292234)
chr7 (4-72)||(47761936-47762004)
chr7 (240-315)||(7357825-7357903)
chr7 (410-457)||(10437408-10437456)
chr7 (410-457)||(10451118-10451166)
chr7 (330-457)||(47762377-47762497)
chr7 (208-294)||(24169533-24169616)
chr7 (547-626)||(36215868-36215947)
chr7 (10-68)||(7874816-7874874)
chr7 (163-266)||(7874630-7874731)
chr7 (27-68)||(24169772-24169813)
chr7 (1-45)||(28292247-28292291)
[»] scaffold0011 (4 HSPs)
scaffold0011 (1-287)||(1873-2150)
scaffold0011 (1-141)||(7354-7494)
scaffold0011 (324-457)||(7539-7674)
scaffold0011 (325-457)||(2286-2420)
[»] chr8 (20 HSPs)
chr8 (11-287)||(31030846-31031115)
chr8 (321-457)||(19430689-19430826)
chr8 (321-457)||(19566838-19566975)
chr8 (325-457)||(19436135-19436268)
chr8 (325-457)||(19572284-19572417)
chr8 (2-177)||(19430320-19430494)
chr8 (2-177)||(19566469-19566643)
chr8 (318-458)||(33616063-33616204)
chr8 (321-458)||(31031214-31031350)
chr8 (221-305)||(33616300-33616385)
chr8 (202-287)||(19435913-19435999)
chr8 (202-287)||(19572062-19572148)
chr8 (321-457)||(13584826-13584968)
chr8 (1-120)||(33616395-33616514)
chr8 (239-319)||(13584665-13584742)
chr8 (126-177)||(19435858-19435909)
chr8 (126-177)||(19572007-19572058)
chr8 (2-72)||(33848315-33848386)
chr8 (238-306)||(19430517-19430587)
chr8 (238-306)||(19566666-19566736)
[»] chr6 (34 HSPs)
chr6 (20-294)||(17289855-17290132)
chr6 (123-309)||(19478512-19478692)
chr6 (318-457)||(19478791-19478931)
chr6 (6-161)||(17281189-17281348)
chr6 (321-457)||(17289607-17289741)
chr6 (2-157)||(11956334-11956490)
chr6 (321-457)||(10485755-10485890)
chr6 (116-199)||(10485472-10485555)
chr6 (321-454)||(17280865-17280994)
chr6 (326-457)||(11956064-11956191)
chr6 (4-169)||(3902226-3902391)
chr6 (508-651)||(5133842-5133985)
chr6 (2-274)||(3902582-3902847)
chr6 (547-653)||(5183928-5184034)
chr6 (326-457)||(29326257-29326383)
chr6 (508-653)||(5692048-5692193)
chr6 (6-71)||(29325851-29325915)
chr6 (6-71)||(29326026-29326090)
chr6 (546-652)||(5104847-5104953)
chr6 (5-59)||(10485382-10485436)
chr6 (2-60)||(19478456-19478514)
chr6 (353-457)||(14450601-14450701)
chr6 (549-653)||(5368380-5368484)
chr6 (521-653)||(5394963-5395095)
chr6 (549-653)||(5423673-5423777)
chr6 (326-438)||(3902883-3902990)
chr6 (549-651)||(5356594-5356696)
chr6 (216-302)||(10643030-10643113)
chr6 (549-643)||(5075709-5075803)
chr6 (213-263)||(29325929-29325979)
chr6 (6-70)||(5600690-5600754)
chr6 (232-271)||(10485569-10485608)
chr6 (326-425)||(13660457-13660552)
chr6 (531-652)||(5174787-5174908)
[»] chr2 (8 HSPs)
chr2 (321-457)||(42915219-42915356)
chr2 (65-148)||(42914999-42915082)
chr2 (321-457)||(5089734-5089872)
chr2 (11-70)||(5089595-5089654)
chr2 (326-385)||(43111538-43111597)
chr2 (216-302)||(44683587-44683671)
chr2 (545-649)||(22586289-22586393)
chr2 (225-274)||(39959632-39959681)
[»] scaffold0132 (2 HSPs)
scaffold0132 (321-457)||(2421-2558)
scaffold0132 (321-457)||(10381-10518)
[»] scaffold0067 (2 HSPs)
scaffold0067 (4-124)||(33629-33750)
scaffold0067 (329-457)||(33305-33428)
[»] chr5 (11 HSPs)
chr5 (321-459)||(14374780-14374919)
chr5 (321-457)||(13581981-13582119)
chr5 (321-402)||(7805729-7805810)
chr5 (214-285)||(7805528-7805600)
chr5 (2-69)||(31987034-31987101)
chr5 (35-91)||(7805409-7805464)
chr5 (234-285)||(13582246-13582298)
chr5 (2-86)||(13582395-13582479)
chr5 (237-267)||(9362003-9362033)
chr5 (234-267)||(14374609-14374642)
chr5 (249-294)||(31987254-31987298)
[»] scaffold0027 (1 HSPs)
scaffold0027 (4-69)||(43413-43478)


Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 14 - 287
Target Start/End: Original strand, 20810692 - 20810964
Alignment:
Q  14 ggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaagtcgacttaatcctcaagtaaac 113  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||  | ||||||||||||||||||    
T  20810692 ggtgtgaagaatgaggggggcgagctctccttttataggaagagttcgtaacaaaaaacgagagacttggggattaag--ggcttaatcctcaagtaaac 20810789  T
Q  114 gcgttttgtttcttaattggatatatccagaaacttctggatacgcgttttggatcgggtcggatcgtaacaattttatttgttacttgtagcactttcg 213  Q
     ||||||||||| ||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||  ||||| ||||||    
T  20810790 acgttttgtttcgtaattggatatatccggaaacttctggatacttgttttggatcgggtcggatcgtaacaattttatttgttacgcgtagcgctttcg 20810889  T
Q  214 gataatgattagattaattaaataattaatttaacattttcaagtgac-aaaaaatatatattattttccaccca 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  20810890 gataatgattagattaattaaataattaatttaacattttcaagtgacaaaaaaatatatattattttccaccca 20810964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 4 - 267
Target Start/End: Original strand, 26962368 - 26962632
Alignment:
Q  4 tgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaagtcgacttaatcc 103  Q
    |||||||||  |||| ||||  |||||||| ||||||||||||||||||||||||| ||||||||||||  ||| |||||||||||||||  ||||||||    
T  26962368 tgtgaattttagtgtaaagatggagtggggcgagctctccttttataggaagagtttgtaacaaaaaacgagagtcttggggattaagtctgcttaatcc 26962467  T
Q  104 tcaagtaaacgcgttttgtttcttaattggatatatccagaaacttctggatacgcgttttggatcgggtcggatcgtaacaattttatttgttacttgt 203  Q
    |||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||  |     
T  26962468 tcaagtaaacgcgttttgtttcttaattggatatatccggaaagttttggatacgcgttttggatcgggtcggatcgtaacaattttatttgttacgcgc 26962567  T
Q  204 agcactttcggataatgattagattaattaaataa-ttaatttaacattttcaagtgacaaaaaa 267  Q
    | |  |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  26962568 atcgttttcggataatgattagattgattaaataatttaatttaacattttcaagtgacaaaaaa 26962632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 2 - 302
Target Start/End: Original strand, 13022333 - 13022616
Alignment:
Q  2 actgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaagtcgacttaat 101  Q
    |||| ||| |||| ||| ||||||||| || | ||||||||||||||||||| ||||||||||||||||||  |  |||| |||||||||||  ||||||    
T  13022333 actgcgaaattcgatgtaaagaatgaggggagcgagctctccttttataggaggagttcgtaacaaaaaacgagttacttagggattaagtctgcttaat 13022432  T
Q  102 cctcaagtaaacgcg-ttttgtttcttaattggatatatccagaaacttctggatacgcgttttggatcgggtcggatcgtaacaattttatttgttact 200  Q
    ||| |||  |||||| ||||||||||||||||||||||||  ||||||||||||||| |||||||||||||                   | |||||||     
T  13022433 ccttaagcgaacgcgtttttgtttcttaattggatatatctggaaacttctggatactcgttttggatcgg-------------------acttgttacg 13022513  T
Q  201 tgtagcactttcggataatgattagattaattaaataattaatttaacattttcaagtgacaaaaaatatatattattttccacccaag-cccaagcccg 299  Q
     ||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||| ||||| | ||||||||||    
T  13022514 cgtagcgcgttcggataatgattagattaattaaataattaatttatcattttcaagtgacaaaaaatatatttcattttctacccacgacccaagcccg 13022613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 19 - 306
Target Start/End: Complemental strand, 33089113 - 33088852
Alignment:
Q  19 gaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaagtcgacttaatcctcaagtaaacgcgtt 118  Q
    |||||||||| |||| ||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||  |||||           |||||||    
T  33089113 gaagaatgaggggggcgagctctccttttataggaggagttcgtaacaaaaaacgagagacttggggattaagtctgcttaa-----------acgcgtt 33089025  T
Q  119 tt-gtttcttaattggatatatccagaaacttctggatacgcgttttggatcgggtcggatcgtaacaattttatttgttacttgtagcactttcggata 217  Q
    || ||||||||||||||||||||| ||||||||||||||| | ||||||||||          ||||||||| ||||         ||| ||||| ||||    
T  33089024 tttgtttcttaattggatatatccggaaacttctggatactcattttggatcg----------taacaatttcattt---------agcgctttctgata 33088944  T
Q  218 atgattagattaattaaataattaatttaacattttcaagtgacaa--aaaatatatattattttccaccca-agcccaagcccggcccggt 306  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||  |||| |||||||||||||||||||   |||||||||||||||||    
T  33088943 atgattagattaattaaataattaatttaacatttccaagtgacaaaaaaaaaatatattattttccacccaccacccaagcccggcccggt 33088852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 325 - 457
Target Start/End: Original strand, 53120181 - 53120314
Alignment:
Q  325 tacccttatataaaccctttctagttggtgtggcttaccaatgtgggacatttttaagtcagacacttacactagttcttgcttggtgtttttc-tatcc 423  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||| | | ||||||||| |||||    
T  53120181 tacccttatataaacactttctagttggtgtggctcaccaatgtgggacatttttaagtcacacactcacactagttcttacatcgtgtttttcttatcc 53120280  T
Q  424 aattttctcactagattcaagtagtgttccaaca 457  Q
    ||||||||||||||||| || |||||||||||||    
T  53120281 aattttctcactagatttaactagtgttccaaca 53120314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 321 - 457
Target Start/End: Complemental strand, 33088753 - 33088616
Alignment:
Q  321 actctacccttatataaaccctttctagttggtgtggcttaccaatgtgggacatttttaagtcagacacttacactagttcttgcttggtgtttttc-t 419  Q
    ||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||| ||||| |||||||||||| | |  |||||||| |    
T  33088753 actctacccttatataaacactttctagttggtttggctcaccaatgtgggacatttttaagtcacacactcacactagttcttacattatgtttttctt 33088654  T
Q  420 atccaattttctcactagattcaagtagtgttccaaca 457  Q
    ||||||||||||||||||||| || |||||||||||||    
T  33088653 atccaattttctcactagatttaactagtgttccaaca 33088616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 321 - 457
Target Start/End: Original strand, 13022705 - 13022842
Alignment:
Q  321 actctacccttatataaaccctttctagttggtgtggcttaccaatgtgggacatttttaagtcagacacttacactagttcttgcttggtgtttttc-t 419  Q
    ||||| ||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||   | ||||||||| |    
T  13022705 actcttcccttatataaacactttctaattggtgtggctcaccaatgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttctt 13022804  T
Q  420 atccaattttctcactagattcaagtagtgttccaaca 457  Q
    ||||||||||||||||||||| || |||||||||||||    
T  13022805 atccaattttctcactagatttaactagtgttccaaca 13022842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 321 - 457
Target Start/End: Complemental strand, 38436407 - 38436270
Alignment:
Q  321 actctacccttatataaaccctttctagttggtgtggcttaccaatgtgggacatttttaagtcagacacttacactagttcttgcttggtgtttttc-t 419  Q
    ||||||||||||||||||| |||| |||||| ||||||| ||||||||||||||||||||||||| || || |||||||||||| | | ||||||||| |    
T  38436407 actctacccttatataaacactttttagttgatgtggctcaccaatgtgggacatttttaagtcacacgctcacactagttcttacattgtgtttttctt 38436308  T
Q  420 atccaattttctcactagattcaagtagtgttccaaca 457  Q
    ||||||||||||||||||||| || | ||| |||||||    
T  38436307 atccaattttctcactagatttaactggtgctccaaca 38436270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 53119835 - 53119976
Alignment:
Q  1 gactgtgaatttcggtgtgaagaatgagtggggt-gagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaagtcgactta 99  Q
    ||||||| | |||||||| ||||||||| ||||  |||||||||||||| |||| |||||||||||||||| |  |||||||||||||||||||  ||||    
T  53119835 gactgtggaattcggtgtaaagaatgagggggggcgagctctccttttaaaggaggagttcgtaacaaaaa-cgagagacttggggattaagtctgctta 53119933  T
Q  100 atcctcaagtaaacgcg-ttttgtttcttaattggatatatcc 141  Q
    ||||| ||||||||||| |||||||| ||||||||||||||||    
T  53119934 atccttaagtaaacgcgtttttgttttttaattggatatatcc 53119976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 38436746 - 38436643
Alignment:
Q  1 gactgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaagtcgacttaa 100  Q
    ||||||||| |||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||  || |||| |||||||||||  |||||    
T  38436746 gactgtgaaattcggtgtgaagaatgaggggggcgagctctccttttataggaggagttcgtaacaaaaaacgagatacttagggattaagtctgcttaa 38436647  T
Q  101 tcct 104  Q
    ||||    
T  38436646 tcct 38436643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 321 - 429
Target Start/End: Original strand, 20811068 - 20811177
Alignment:
Q  321 actctacccttatataaaccctttctagttggtgtggcttaccaatgtgggacatttttaagtcagacacttacactagttcttgcttggtgtttttc-t 419  Q
    |||||||| |||||||||| |||| |||||| ||||| ||||||||||||||||||||||||||| ||||| |||||||||||| | | ||||||||| |    
T  20811068 actctacctttatataaacactttttagttgatgtggtttaccaatgtgggacatttttaagtcacacactcacactagttcttacattgtgtttttctt 20811167  T
Q  420 atccaatttt 429  Q
    ||||||||||    
T  20811168 atccaatttt 20811177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 324 - 457
Target Start/End: Original strand, 11777233 - 11777360
Alignment:
Q  324 ctacccttatataaaccctttctagttggtgtggcttaccaatgtgggacatttttaagtcagacacttacactagttcttgcttggtgtttttctatcc 423  Q
    |||||||||||||||| ||| |||||| |||||||| ||||||||||||||||||||||||| ||    |||||||||||| |   ||||||||||||||    
T  11777233 ctacccttatataaacacttgctagttagtgtggctcaccaatgtgggacatttttaagtcacac----acactagttcttaccatgtgtttttctatcc 11777328  T
Q  424 aattttctcactagattcaagtagtgttccaaca 457  Q
    || ||   ||||||| ||||  ||||||||||||    
T  11777329 aactt--ccactagaatcaacgagtgttccaaca 11777360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 21494096 - 21494027
Alignment:
Q  2 actgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaa 71  Q
    ||||||||||||||||  |||||||||||||| ||| |||||||||||||||||| ||||||||||||||    
T  21494096 actgtgaatttcggtggtaagaatgagtggggcgagatctccttttataggaagaattcgtaacaaaaaa 21494027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 321 - 390
Target Start/End: Original strand, 26962680 - 26962749
Alignment:
Q  321 actctacccttatataaaccctttctagttggtgtggcttaccaatgtgggacatttttaagtcagacac 390  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||| ||| ||||||||||| ||||    
T  26962680 actctacccttatataaacactttctagttggtgtggctcaccaatgtgagacttttttaagtcacacac 26962749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 2 - 142
Target Start/End: Original strand, 6025471 - 6025609
Alignment:
Q  2 actgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaagtcgacttaat 101  Q
    |||||||| |||||||| |||||||||||||  |||| ||||||||||||| |||||| ||||||||||||  | |||||  ||||||||||  ||||||    
T  6025471 actgtgaaattcggtgtaaagaatgagtgggacgagccctccttttatagggagagtttgtaacaaaaaacgagtgacttaaggattaagtcagcttaat 6025570  T
Q  102 cctcaagtaaacgcgttt-tgtttcttaattggatatatcca 142  Q
    | | |||    ||||||| ||||||||| |||||||||||||    
T  6025571 cattaag---ccgcgtttctgtttcttagttggatatatcca 6025609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 243 - 305
Target Start/End: Original strand, 53120007 - 53120071
Alignment:
Q  243 tttaacattttcaagtgacaaaa-aatatatattattttccacccaag-cccaagcccggcccgg 305  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||    
T  53120007 tttaacattttcaagtgacaaaaaaatatatattattttccacccacgacccaagcccggcccgg 53120071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 208 - 292
Target Start/End: Complemental strand, 2617135 - 2617052
Alignment:
Q  208 ctttcggataatgattagattaattaaataattaatttaacattttcaagtgacaaaaaatatatattattttccacccaagccc 292  Q
    ||||||||||||||||| |||||| ||| ||||||||||||||||||||| |||||||||   || || ||||| ||||||||||    
T  2617135 ctttcggataatgattaaattaataaaa-aattaatttaacattttcaagggacaaaaaaataatctttttttctacccaagccc 2617052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 236 - 287
Target Start/End: Complemental strand, 38436566 - 38436514
Alignment:
Q  236 taattaatttaacattttcaagtgacaa-aaaatatatattattttccaccca 287  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  38436566 taattaatttatcattttcaagtgacaaaaaaatatatattattttccaccca 38436514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 1740896 - 1740826
Alignment:
Q  2 actgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaac 72  Q
    ||||||||||||||||| |||||| |||| |  || ||||| ||||||| |||||||||||||||||||||    
T  1740896 actgtgaatttcggtgtaaagaataagtgagacgaactctcattttatatgaagagttcgtaacaaaaaac 1740826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 25023708 - 25023640
Alignment:
Q  2 actgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaa 70  Q
    ||||||||||||| |||   |||||||||||| |||||||||||||||||| |||| || |||||||||    
T  25023708 actgtgaatttcgatgtactgaatgagtggggcgagctctccttttatagggagagctcataacaaaaa 25023640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 326 - 457
Target Start/End: Original strand, 26929373 - 26929498
Alignment:
Q  326 acccttatataaaccctttctagttggtgtggcttaccaatgtgggacatttttaagtcagacacttacactagttcttgcttggtgtttttctatccaa 425  Q
    |||||||||||||| ||| |||||||||||  || |||||||||  ||||||||||||||       |||||||||||| | |  |||||||||||||||    
T  26929373 acccttatataaacacttgctagttggtgtaactcaccaatgtgaaacatttttaagtca------cacactagttcttacattatgtttttctatccaa 26929466  T
Q  426 ttttctcactagattcaagtagtgttccaaca 457  Q
    |||| | |||||| | || || ||||||||||    
T  26929467 ttttttgactagaattaactaatgttccaaca 26929498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 47408698 - 47408761
Alignment:
Q  6 tgaatttcggtgtgaagaatgagtggggtgagctctcc-ttttataggaagagttcgtaacaaa 68  Q
    ||||||||| ||| ||||||||| ||||||| |||||| ||||||||| |||||||||||||||    
T  47408698 tgaatttcgatgtaaagaatgagcggggtgaactctcccttttatagggagagttcgtaacaaa 47408761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 795190 - 795122
Alignment:
Q  2 actgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaa 70  Q
    |||||||||||| |||| ||||||  ||| || ||| |||||||||||||| |||| ||||||||||||    
T  795190 actgtgaatttcagtgtaaagaataggtgaggggagttctccttttatagggagagatcgtaacaaaaa 795122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 26928916 - 26928980
Alignment:
Q  2 actgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaac 72  Q
    ||||||||||||||||| |||||      ||| ||||||| |||||||||| |||||||||||||||||||    
T  26928916 actgtgaatttcggtgtaaagaa------gggcgagctcttcttttataggcagagttcgtaacaaaaaac 26928980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 319
Target Start/End: Complemental strand, 30341499 - 30341464
Alignment:
Q  284 cccaagcccaagcccggcccggtcggacggcggcgt 319  Q
    ||||||||||||| ||||||||||||||||||||||    
T  30341499 cccaagcccaagctcggcccggtcggacggcggcgt 30341464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 173 - 267
Target Start/End: Complemental strand, 1740738 - 1740644
Alignment:
Q  173 tcggatcgtaacaattttatttgttact--tgtagcactttcggataatgattagattaattaaataattaatttaacattttcaagtgacaaaaaa 267  Q
    |||||||||||||| ||||||||||||   || | |||||| | |||||||||| | |||| |||  |||||||||||| |||||| ||||||||||    
T  1740738 tcggatcgtaacaaatttatttgttacaaatgaaacacttttgaataatgattaaagtaataaaa--attaatttaacaatttcaattgacaaaaaa 1740644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 328 - 390
Target Start/End: Original strand, 6025740 - 6025802
Alignment:
Q  328 ccttatataaaccctttctagttggtgtggcttaccaatgtgggacatttttaagtcagacac 390  Q
    |||||||||||| ||| |||||| ||||| || ||||||||| ||||||||||| ||| ||||    
T  6025740 ccttatataaacacttgctagttagtgtgactcaccaatgtgagacatttttaaatcacacac 6025802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 417 - 457
Target Start/End: Original strand, 3448719 - 3448759
Alignment:
Q  417 tctatccaattttctcactagattcaagtagtgttccaaca 457  Q
    |||||||||||||||||||||||| || |||||||| ||||    
T  3448719 tctatccaattttctcactagatttaactagtgttcaaaca 3448759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 238 - 274
Target Start/End: Complemental strand, 21493955 - 21493919
Alignment:
Q  238 attaatttaacattttcaagtgacaaaaaatatatat 274  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  21493955 attaatttatcattttcaagtgataaaaaatatatat 21493919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 203; Significance: 1e-110; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 10120369 - 10120095
Alignment:
Q  1 gactgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaagtcgacttaa 100  Q
    ||||||||| ||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||    
T  10120369 gactgtgaaattcggtgtgtagaatgaggggggcgagctctccttttataggaagagttcgtaacaaaaaacgagagacttggggattaagtcggcttaa 10120270  T
Q  101 tcctcaagtaaacgcgttttgtttcttaattggatatatccagaaacttctggatacgcg-ttttggatcgggtcggatcgtaacaattttatttgttac 199  Q
    |||||||||||||||||||||||||||||||||||||||||   ||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  10120269 tcctcaagtaaacgcgttttgtttcttaattggatatatccgagaacttctggatactcgtttttggatcgggtcggatcgtaacaattttatttgttac 10120170  T
Q  200 ttgtagcactttcggataatgattagattaattaaataattaatttaacattttcaagtgacaaaaaatatatat 274  Q
       |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10120169 gcatagcgctttcggataatgattagattaattaaataattaatataacattttcaagtgacaaaaaatatatat 10120095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 2 - 280
Target Start/End: Original strand, 24490340 - 24490611
Alignment:
Q  2 actgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaagtcgacttaat 101  Q
    |||||||||||||||||||||||||||||| |  ||||||||||||||||| |||||||||||||||||||  | ||||||||||||||||   ||||||    
T  24490340 actgtgaatttcggtgtgaagaatgagtggagcaagctctccttttatagggagagttcgtaacaaaaaacgagtgacttggggattaagtaagcttaat 24490439  T
Q  102 cctcaagtaaacgcgttttg-tttcttaattggatatatccagaaacttctggatacgcgttttggatcgggtcggatcgtaacaattttatttgttact 200  Q
    |||||||||||||||||||  |||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||     
T  24490440 cctcaagtaaacgcgttttcatttcttaattggatatatctggaaacttctggatacacgttttggatcgggtcggatcgtaacgattttatttgttacg 24490539  T
Q  201 tgtagcactttcggataatgattagattaattaaataattaatttaacattttcaagtgacaaaaaatatatattatttt 280  Q
    |||||| ||||| |||||||||||        || |||||||||||||| |||||||||| ||||||||||||| |||||    
T  24490540 tgtagcgctttccgataatgatta--------aattaattaatttaacactttcaagtgataaaaaatatatatcatttt 24490611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 10120597 - 10120461
Alignment:
Q  1 gactgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaa-cttgagacttggggattaagtcgactta 99  Q
    ||||| ||| ||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||| ||||    
T  10120597 gactgcgaaattcggtgtgtagaatgaggggggcgagctctccttttataggaagagttcgtaacaaaaaaacgagagacttggggattaagtcggctta 10120498  T
Q  100 atcctcaagtaaacgcgttttgtttcttaattggata 136  Q
    |||||||||||||||||||||||||||||||||||||    
T  10120497 atcctcaagtaaacgcgttttgtttcttaattggata 10120461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 321 - 458
Target Start/End: Complemental strand, 10119943 - 10119805
Alignment:
Q  321 actctacccttatataaaccctttctagttggtgtggcttaccaatgtgggacatttttaagtcagacacttacactagttcttgcttggtgtttttc-t 419  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||| | | ||||||||| |    
T  10119943 actctacccttatataaacactttctagttggtgtggctcaccaatgtgggacatttttaagtcacacactcacactagttcttacattgtgtttttctt 10119844  T
Q  420 atccaattttctcactagattcaagtagtgttccaacat 458  Q
    ||||||||||||||| |||||||| ||||||||||||||    
T  10119843 atccaattttctcacgagattcaactagtgttccaacat 10119805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 321 - 457
Target Start/End: Original strand, 24490750 - 24490882
Alignment:
Q  321 actctacccttatataaaccctttctagttggtgtggcttaccaatgtgggacatttttaagtcagacacttacactagttcttgcttggtgtttttcta 420  Q
    ||||||||||||||||||| ||| |||||||||||||||  ||||| |||||||||||||||| | ||    |||||||||||| | | |||||||||||    
T  24490750 actctacccttatataaacacttgctagttggtgtggctctccaatatgggacatttttaagttacac----acactagttcttacattgtgtttttcta 24490845  T
Q  421 tccaattttctcactagattcaagtagtgttccaaca 457  Q
    |||||||||||||||||||| || |||||||||||||    
T  24490846 tccaattttctcactagatttaactagtgttccaaca 24490882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 2 - 157
Target Start/End: Complemental strand, 30564200 - 30564044
Alignment:
Q  2 actgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaagtcgacttaat 101  Q
    ||||||||||||||||| |||||||||||||  |||||||||||||||||| |||||||||||||||||||  | |||||  ||||||||||  ||||||    
T  30564200 actgtgaatttcggtgtaaagaatgagtgggacgagctctccttttatagggagagttcgtaacaaaaaacgagtgacttaaggattaagtctgcttaat 30564101  T
Q  102 cctcaagtaaacgcgttt-tgtttcttaattggatatatccagaaacttctggatac 157  Q
    | | ||| || ||||||| ||||||||| |||||||||||  |||| |||| |||||    
T  30564100 ctttaagcaaccgcgtttatgtttcttagttggatatatctggaaaattctagatac 30564044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 2 - 104
Target Start/End: Complemental strand, 10318562 - 10318460
Alignment:
Q  2 actgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaagtcgacttaat 101  Q
    ||||||||||||||||| |||||||||| ||| |||||||||||||||||| |||||| ||||||||||||  | |||||  ||||||||||  ||||||    
T  10318562 actgtgaatttcggtgtaaagaatgagttgggggagctctccttttataggcagagtttgtaacaaaaaacgagtgacttaaggattaagtcagcttaat 10318463  T
Q  102 cct 104  Q
    |||    
T  10318462 cct 10318460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 321 - 457
Target Start/End: Original strand, 653644 - 653782
Alignment:
Q  321 actctacccttatataaaccctttctagttggtgtggcttaccaatgtgggacatttttaagtcagacacttacactagttcttgcttggtg-tttttct 419  Q
    ||||| ||||||||||||| ||| |||||||| ||| || ||||||||||||||||||||||||| | |   ||||||||||||   | ||| || ||||    
T  653644 actcttcccttatataaacacttactagttggggtgactaaccaatgtgggacatttttaagtcacataaccacactagttcttatgtagtgattattct 653743  T
Q  420 -atccaattttctcactagattcaagtagtgttccaaca 457  Q
     ||||||||||||||||||||| || |||||||||||||    
T  653744 catccaattttctcactagattaaactagtgttccaaca 653782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 214 - 285
Target Start/End: Original strand, 653512 - 653582
Alignment:
Q  214 gataatgattagattaattaaataattaatttaacattttcaagtgacaaaaaatatatattattttccacc 285  Q
    ||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||| | ||||||||||    
T  653512 gataatgattaaattaattaa-taattaatttatcattttcaagtgacaaaaaatatatttcattttccacc 653582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 522 - 653
Target Start/End: Complemental strand, 4330540 - 4330409
Alignment:
Q  522 tcaatgttatgtatcttggtcgatatttctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctcccaaacttccctaa 621  Q
    |||||||| ||||||||||| |  ||||||||| |||||||| | | || ||| ||||||||||| ||||||| |  |  |||||||||||| |||||||    
T  4330540 tcaatgttttgtatcttggttgtgatttctttgaaaatatcatacataagttgttcttgtaaatagacttgtctagaaacttgctcccaaacctccctaa 4330441  T
Q  622 tatttgcgacgaagctcttaccatcaaaattg 653  Q
    ||||||| |  |||||| |||| |||||||||    
T  4330440 tatttgcaagaaagctcctaccttcaaaattg 4330409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 507 - 628
Target Start/End: Complemental strand, 25568067 - 25567946
Alignment:
Q  507 ttattttttccttcctcaatgttatgtatcttggtcgatatttctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgct 606  Q
    |||||||||||||||||||| || || ||||||||||   |||||||||||| |||| | ||||| || ||||||||  |||| || | || |||||| |    
T  25568067 ttattttttccttcctcaatattttgaatcttggtcgtcgtttctttgcaaacatcaaagagaatctgttcttgtaacgacacctgaccaacattttgtt 25567968  T
Q  607 cccaaacttccctaatatttgc 628  Q
    |||| ||||| |||||||||||    
T  25567967 cccagacttctctaatatttgc 25567946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 653382 - 653438
Alignment:
Q  35 gagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaag 91  Q
    ||||||||||||||||||| ||||||||||| ||||||  |||||||||||||||||    
T  653382 gagctctccttttataggaggagttcgtaactaaaaacgagagacttggggattaag 653438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 522 - 628
Target Start/End: Complemental strand, 4342993 - 4342887
Alignment:
Q  522 tcaatgttatgtatcttggtcgatatttctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctcccaaacttccctaa 621  Q
    |||||||| ||||||||||| | | |||||||| ||||||||   | || ||| |||||||||||||||||||    |  |||||||||||| |||||||    
T  4342993 tcaatgttttgtatcttggtagttgtttctttgaaaatatcatgcataagttgttcttgtaaatacacttgtcctgaaacttgctcccaaacctccctaa 4342894  T
Q  622 tatttgc 628  Q
    |||||||    
T  4342893 tatttgc 4342887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 547 - 652
Target Start/End: Original strand, 4126413 - 4126518
Alignment:
Q  547 tttctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctcccaaacttccctaatatttgcgacgaagctcttaccatc 646  Q
    |||||||| |||||||| | | || ||| ||||||||||||||||||| |  |  |||||||||||| ||||| |||||||| |  |||||| |||| ||    
T  4126413 tttctttgaaaatatcatacataagttgttcttgtaaatacacttgtccagaaacttgctcccaaacctcccttatatttgcaagaaagctcctaccttc 4126512  T
Q  647 aaaatt 652  Q
    ||||||    
T  4126513 aaaatt 4126518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 267
Target Start/End: Original strand, 19725594 - 19725653
Alignment:
Q  208 ctttcggataatgattagattaattaaataattaatttaacattttcaagtgacaaaaaa 267  Q
    ||||||||||||||||| |||||  ||| ||||||||||||||| ||| |||| ||||||    
T  19725594 ctttcggataatgattaaattaacaaaaaaattaatttaacattctcaggtgataaaaaa 19725653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 3258651 - 3258705
Alignment:
Q  10 tttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaa 64  Q
    |||| |||||||||||||||| || |||||||||||||||| | |||||| ||||    
T  3258651 tttcagtgtgaagaatgagtgaggcgagctctccttttataaggagagtttgtaa 3258705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 457
Target Start/End: Complemental strand, 8082862 - 8082773
Alignment:
Q  361 accaatgtgggacatttttaagtcagacacttacactagttcttgcttggtgtttttctatccaattttctcactagattcaagtagtgttccaaca 457  Q
    ||||||||||| ||||||||||||| |||||      ||||||| | | |||||||||||||||| ||| |||||||| | || |||||||||||||    
T  8082862 accaatgtggggcatttttaagtcacacact------agttcttacatagtgtttttctatccaacttt-tcactagaattaactagtgttccaaca 8082773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 391
Target Start/End: Complemental strand, 10318310 - 10318245
Alignment:
Q  326 acccttatataaaccctttctagttggtgtggcttaccaatgtgggacatttttaagtcagacact 391  Q
    |||||||||||| | |||  |||||||||||||| | ||||||| ||||||||||| ||| |||||    
T  10318310 acccttatataatcacttgttagttggtgtggctcatcaatgtgagacatttttaaatcacacact 10318245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 73
Target Start/End: Original strand, 15498977 - 15499014
Alignment:
Q  36 agctctccttttataggaagagttcgtaacaaaaaact 73  Q
    ||||||||||||||||| ||||||||||| ||||||||    
T  15498977 agctctccttttatagggagagttcgtaataaaaaact 15499014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 171; Significance: 2e-91; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 26650954 - 26650669
Alignment:
Q  1 gactgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaagtcgacttaa 100  Q
    ||||||| | |||||||||||||||||| |||| ||||||||||||| ||||| ||||||||||||||||||  || |||| | |||||||||  |||||    
T  26650954 gactgtggaattcggtgtgaagaatgaggggggcgagctctccttttgtaggaggagttcgtaacaaaaaacgagatacttagagattaagtctgcttaa 26650855  T
Q  101 tcctcaagtaaacgcgtttt-gtttcttaattggatatatccagaaacttctggatacgcgttttggatcgggtcggatcgtaacaattttatttgttac 199  Q
    |||| ||| ||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||     
T  26650854 tccttaagcaaacgcgtttttgtttcttaattggatatatccggaaacttctggatactcgttttggatcgggtcggatcgtaacaatctcatttgttat 26650755  T
Q  200 ttgtagcactttcggataatgattagattaattaaataattaatttaacattttcaagtgacaaaaaatatatattattttccaccc 286  Q
      ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||    
T  26650754 gcgtagcgctttcggataatgattagattaattaaataattaatttatcattttcaagtgacaaaaaa-aaatattattttccaccc 26650669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 321 - 457
Target Start/End: Original strand, 31289411 - 31289547
Alignment:
Q  321 actctacccttatataaaccctttctagttggtgtggcttaccaatgtgggacatttttaagtcagacacttacactagttcttgcttggtgtttttcta 420  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||| | | |||||||  ||    
T  31289411 actctacccttatataaacactttctagttggtgtggctcaccaatgtgggacatttttaagtcacacactcacactagttcttacattgtgttttctta 31289510  T
Q  421 tccaattttctcactagattcaagtagtgttccaaca 457  Q
    ||||||||||||||||||||||| |||||||||||||    
T  31289511 tccaattttctcactagattcaactagtgttccaaca 31289547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 321 - 457
Target Start/End: Original strand, 13891461 - 13891598
Alignment:
Q  321 actctacccttatataaaccctttctagttggtgtggcttaccaatgtgggacatttttaagtcagacacttacactagttcttgcttggtgtttttc-t 419  Q
    ||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||   | ||||||||| |    
T  13891461 actcttcccttatataaacactttctagttggtgtggctcaccaatgtgggacatttttaagtcacacacttacactagttcttatattgtgtttttctt 13891560  T
Q  420 atccaattttctcactagattcaagtagtgttccaaca 457  Q
    ||||||||||||||||||||| || |||||||||||||    
T  13891561 atccaattttctcactagatttaactagtgttccaaca 13891598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 318 - 458
Target Start/End: Complemental strand, 39746814 - 39746673
Alignment:
Q  318 gttactctacccttatataaaccctttctagttggtgtggcttaccaatgtgggacatttttaagtcagacacttacactagttcttgcttggtgttttt 417  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||| ||  |||||||||||||| ||||| |||||||||||| | | ||||||||    
T  39746814 gttactctacccttatataaacactttctagttggtgtggctcaccaatatgaaacatttttaagtcacacactcacactagttcttacattgtgttttt 39746715  T
Q  418 c-tatccaattttctcactagattcaagtagtgttccaacat 458  Q
    | ||||||||||||||||||||||||| ||||||||||||||    
T  39746714 cttatccaattttctcactagattcaactagtgttccaacat 39746673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 321 - 457
Target Start/End: Original strand, 38734782 - 38734919
Alignment:
Q  321 actctacccttatataaaccctttctagttggtgtggcttaccaatgtgggacatttttaagtcagacacttacactagttcttgcttggtgtttttc-t 419  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||| ||||| ||||||||||||   | ||||||||| |    
T  38734782 actctacccttatataaacactttctagttggtgtggctcaccaatatgggacatttttaagtcacacactcacactagttcttatattgtgtttttctt 38734881  T
Q  420 atccaattttctcactagattcaagtagtgttccaaca 457  Q
    ||||||||||||||||||||| || |||||||||||||    
T  38734882 atccaattttctcactagatttaactagtgttccaaca 38734919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 321 - 457
Target Start/End: Original strand, 14582404 - 14582541
Alignment:
Q  321 actctacccttatataaaccctttctagttggtgtggcttaccaatgtgggacatttttaagtcagacacttacactagttcttgcttggtgtttttc-t 419  Q
    ||||||||||||||||||   |||||||||||||||| | ||||||||||||||||||||||||| ||||| |||||||||||| | | ||||||||| |    
T  14582404 actctacccttatataaaaaatttctagttggtgtggttcaccaatgtgggacatttttaagtcacacactcacactagttcttacattgtgtttttctt 14582503  T
Q  420 atccaattttctcactagattcaagtagtgttccaaca 457  Q
    ||||||||||||||||||||| || |||||||||||||    
T  14582504 atccaattttctcactagatttaactagtgttccaaca 14582541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 321 - 457
Target Start/End: Complemental strand, 26650564 - 26650428
Alignment:
Q  321 actctacccttatataaaccctttctagttggtgtggcttaccaatgtgggacatttttaagtcagacacttacactagttcttgcttggtgtttttc-t 419  Q
    ||||||||||||||||| | ||||||||||| ||||||| ||||||||||||||||||||||||| ||||| |||||||||||| | | ||||||||| |    
T  26650564 actctacccttatataa-cactttctagttgatgtggctcaccaatgtgggacatttttaagtcacacactcacactagttcttacattgtgtttttctt 26650466  T
Q  420 atccaattttctcactagattcaagtagtgttccaaca 457  Q
    ||||||||||||||||||||| || |||||||||||||    
T  26650465 atccaattttctcactagatttaactagtgttccaaca 26650428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 16 - 140
Target Start/End: Original strand, 13891133 - 13891258
Alignment:
Q  16 tgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaagtcgacttaatcctcaagtaaacgc 115  Q
    ||||||||||||| || | ||||||||||||||||||| ||||||||||||||||||  |  |||| |||||||||||  ||||||||| ||| ||||||    
T  13891133 tgtgaagaatgaggggagcgagctctccttttataggaggagttcgtaacaaaaaacgagttacttagggattaagtctgcttaatccttaagcaaacgc 13891232  T
Q  116 g-ttttgtttcttaattggatatatc 140  Q
    | ||||||||||||||| ||||||||    
T  13891233 gtttttgtttcttaattagatatatc 13891258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 217 - 305
Target Start/End: Original strand, 38734602 - 38734693
Alignment:
Q  217 aatgattagattaattaaataattaatttaacattttcaagtgacaaaaaatatata--ttattttccacccaag-cccaagcccggcccgg 305  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||| |||||| | ||||||||||||||||    
T  38734602 aatgattagattaattaaataattaatttatcattttcaagtgacaaaaaatatatattttatttttcacccacgacccaagcccggcccgg 38734693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 364 - 457
Target Start/End: Complemental strand, 5602264 - 5602170
Alignment:
Q  364 aatgtgggacatttttaagtcagacacttacactagttcttgcttggtgtttttc-tatccaattttctcactagattcaagtagtgttccaaca 457  Q
    |||||||||||||||||||||| ||||| |||||||||||| | | ||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  5602264 aatgtgggacatttttaagtcacacactcacactagttcttacattgtgtttttcttatccaattttctcactaaattcaactagtgttccaaca 5602170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 49 - 141
Target Start/End: Complemental strand, 19406611 - 19406519
Alignment:
Q  49 taggaagagttcgtaacaaaaaacttgagacttggggattaagtcgacttaatcctcaagtaaacgcgttttgtttcttaattggatatatcc 141  Q
    ||||||||||| ||||||||||||  |||||||||||||||||||| || ||||||||||||||   | ||||||||||||||||||||||||    
T  19406611 taggaagagtttgtaacaaaaaacgagagacttggggattaagtcggctgaatcctcaagtaaataagatttgtttcttaattggatatatcc 19406519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 39747071 - 39747002
Alignment:
Q  2 actgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaa 71  Q
    |||| ||| ||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  39747071 actgcgaaattcagtgtgaagaatgaggggggcgagctctccttttataggaagagttcgtaacaaaaaa 39747002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 321 - 402
Target Start/End: Original strand, 10106697 - 10106778
Alignment:
Q  321 actctacccttatataaaccctttctagttggtgtggcttaccaatgtgggacatttttaagtcagacacttacactagttc 402  Q
    ||||| ||||||||||||| ||| |||||||| ||| || ||||||||||||||||||||||||| |||   ||||||||||    
T  10106697 actctccccttatataaacacttactagttggggtgactaaccaatgtgggacatttttaagtcacacaaccacactagttc 10106778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 326 - 457
Target Start/End: Original strand, 12179363 - 12179494
Alignment:
Q  326 acccttatataaaccctttctagttggtgt----ggcttaccaatgtgggacatttttaagtcagacacttacactagttcttgcttggtgtttttctat 421  Q
    |||||||||||||| ||| |||||||||||    |||| |||||||| ||| |||||||||||| ||||    |||||||||| | | ||||||||||||    
T  12179363 acccttatataaacacttgctagttggtgtacgtggctcaccaatgtaggatatttttaagtcacacac----actagttcttacattgtgtttttctat 12179458  T
Q  422 ccaattttctcactagattcaagtagtgttccaaca 457  Q
    |||||||| | |||||| | || ||| |||||||||    
T  12179459 ccaatttttttactagaattaactagggttccaaca 12179494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 130 - 175
Target Start/End: Complemental strand, 39746992 - 39746947
Alignment:
Q  130 ttggatatatccagaaacttctggatacgcgttttggatcgggtcg 175  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||    
T  39746992 ttggatatatccggaaacttctggatactcgttttggatcgggtcg 39746947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 202 - 246
Target Start/End: Complemental strand, 19406510 - 19406466
Alignment:
Q  202 gtagcactttcggataatgattagattaattaaataattaattta 246  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||    
T  19406510 gtagcgcttttggataatgattagattaattaaataattaattta 19406466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 318
Target Start/End: Original strand, 10106531 - 10106620
Alignment:
Q  237 aattaatttaacattttcaagtgac-aaaaaatatatattattttcc------acccaag-cccaagcccggcccggtcggacggcggcg 318  Q
    |||||||||| |||||||||||||| ||||||||||| | |||||||      ||||| | |||||||||||||||||||||||||||||    
T  10106531 aattaatttatcattttcaagtgacaaaaaaatatatttcattttccaccacgacccacgccccaagcccggcccggtcggacggcggcg 10106620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 19422657 - 19422599
Alignment:
Q  1 gactgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagtt 59  Q
    ||||||||| |||||||| ||||| ||| |||| |||||||| ||||||||||||||||    
T  19422657 gactgtgaaattcggtgtcaagaacgaggggggcgagctctcattttataggaagagtt 19422599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 308
Target Start/End: Complemental strand, 39746945 - 39746899
Alignment:
Q  262 aaaaaatatatattattttccacccaagcccaagcccggcccggtcg 308  Q
    |||| ||||||||||||||||||||||||||||| | ||||||||||    
T  39746945 aaaatatatatattattttccacccaagcccaagtctggcccggtcg 39746899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 10106441 - 10106496
Alignment:
Q  35 gagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaag 91  Q
    ||||||||||||||||||| ||||||||||| ||||||  || ||||||||||||||    
T  10106441 gagctctccttttataggaggagttcgtaac-aaaaacgagatacttggggattaag 10106496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 267
Target Start/End: Original strand, 14724812 - 14724842
Alignment:
Q  237 aattaatttaacattttcaagtgacaaaaaa 267  Q
    |||||||||||||||||||||||||||||||    
T  14724812 aattaatttaacattttcaagtgacaaaaaa 14724842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 355
Target Start/End: Complemental strand, 19406318 - 19406284
Alignment:
Q  321 actctacccttatataaaccctttctagttggtgt 355  Q
    ||||||||||||||||||| |||||||||||||||    
T  19406318 actctacccttatataaacactttctagttggtgt 19406284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 423 - 459
Target Start/End: Original strand, 10106801 - 10106837
Alignment:
Q  423 caattttctcactagattcaagtagtgttccaacata 459  Q
    |||||||||||||||||| || |||||||||||||||    
T  10106801 caattttctcactagattgaactagtgttccaacata 10106837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 149; Significance: 2e-78; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 33226654 - 33226911
Alignment:
Q  1 gactgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaagtcgacttaa 100  Q
    ||||||| | |||||||| ||||||||| |||| ||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||  |||||    
T  33226654 gactgtggaattcggtgtaaagaatgaggggggcgagctctccttttataggaggagttcgtaacaaaaaacgagagacttggggattaagtctgcttaa 33226753  T
Q  101 tcctcaagtaaacgcg-ttttgtttcttaattggatatatccagaaacttctggatacgcgttttggatcgggtcggatcgtaacaattttatttgttac 199  Q
    |||| ||||||||||| ||||||||||||||||||||||||  ||||||||||||||| ||||||           |||||||||||||| |||||||||    
T  33226754 tccttaagtaaacgcgtttttgtttcttaattggatatatctggaaacttctggatactcgtttt----------agatcgtaacaatttcatttgttac 33226843  T
Q  200 ttgtagcactttcggataatgattagattaattaaataattaatttaacattttcaagtgacaaaaaa 267  Q
      ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33226844 gcgtagcgctttcggataatgattagattaattaaataattaatttaacattttcaagtgacaaaaaa 33226911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 35 - 287
Target Start/End: Original strand, 24528696 - 24528940
Alignment:
Q  35 gagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaagtcgacttaatcctcaagtaaacgcgtttt-gtttcttaattgg 133  Q
    ||||||||||||||||||| ||||||||||||||||||  |  |||| |||||||||||  ||||||||| ||| |||||| |||| |||||||||||||    
T  24528696 gagctctccttttataggaggagttcgtaacaaaaaacgagttacttagggattaagtctgcttaatccttaagcaaacgcatttttgtttcttaattgg 24528795  T
Q  134 atatatccagaaacttctggatacgcgttttggatcgggtcggatcgtaacaattttatttgttacttgtagcactttcggataatgattagattaatta 233  Q
    |||||||| ||||||||||||||| ||||||||||          ||||||||| | |||||||||  ||||| ||||||||||||||||||||||||||    
T  24528796 atatatccggaaacttctggatactcgttttggat----------cgtaacaatctcatttgttacgcgtagcgctttcggataatgattagattaatta 24528885  T
Q  234 aataattaatttaacattttcaagtgac-aaaaaatatatattattttccaccca 287  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  24528886 aataattaatttatcattttcaagtgacaaaaaaatatatattattttccaccca 24528940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 2 - 149
Target Start/End: Original strand, 9973770 - 9973917
Alignment:
Q  2 actgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaagtcgacttaat 101  Q
    |||| ||| |||||||| ||||||||| || | ||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||| ||||||    
T  9973770 actgcgaaattcggtgttaagaatgaggggagcgagctctccttttataggaagagtttgtaacaaaaaacgagagacttggggattaagtcggcttaat 9973869  T
Q  102 cctcaagtaaacgcgttttgtttcttaattggatatatccagaaactt 149  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9973870 cctcaagtaaacgcgttttgtttcttaattggatatatccaaaaactt 9973917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 321 - 457
Target Start/End: Original strand, 9973925 - 9974062
Alignment:
Q  321 actctacccttatataaaccctttctagttggtgtggcttaccaatgtgggacatttttaagtcagacacttacactagttcttgcttggtgtttttc-t 419  Q
    ||||||||||||||| |||  |||||||||||||||||| ||||||||||||||||||||||||| ||||| ||| |||||||| | | ||||||||| |    
T  9973925 actctacccttatattaacaatttctagttggtgtggctcaccaatgtgggacatttttaagtcacacactcacattagttcttacattgtgtttttctt 9974024  T
Q  420 atccaattttctcactagattcaagtagtgttccaaca 457  Q
    |||||||||||||||||||||||| |||||||||||||    
T  9974025 atccaattttctcactagattcaactagtgttccaaca 9974062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 321 - 457
Target Start/End: Original strand, 33226975 - 33227113
Alignment:
Q  321 actctacccttatataaaccctttctagttggtgtggcttaccaatgtgggacatttttaagtcagacacttacactagttcttgcttggtgtttttc-- 418  Q
    ||||||||||||||||||| |||||||||||||||| || |||||||||| |||||||||||||| ||||| |||||||||||| | | |||||||||      
T  33226975 actctacccttatataaacactttctagttggtgtgactcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgtgtttttcct 33227074  T
Q  419 tatccaattttctcactagattcaagtagtgttccaaca 457  Q
    |||||||||||||||||||||| || |||||||||||||    
T  33227075 tatccaattttctcactagatttaactagtgttccaaca 33227113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 321 - 457
Target Start/End: Original strand, 7357990 - 7358127
Alignment:
Q  321 actctacccttatataaaccctttctagttggtgtggcttaccaatgtgggacatttttaagtcagacacttacactagttcttgcttggtgtttttc-t 419  Q
    ||||||||||||||||||| ||||||| ||||||||||| |||||| |||||||||||||||||| || || |||||||||||||| | ||||||||| |    
T  7357990 actctacccttatataaacactttctaattggtgtggctcaccaatatgggacatttttaagtcacacgctcacactagttcttgcattgtgtttttctt 7358089  T
Q  420 atccaattttctcactagattcaagtagtgttccaaca 457  Q
    ||||||||||||||  |||||||| |||||||||||||    
T  7358090 atccaattttctcaaaagattcaactagtgttccaaca 7358127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 321 - 457
Target Start/End: Original strand, 24529046 - 24529183
Alignment:
Q  321 actctacccttatataaaccctttctagttggtgtggcttaccaatgtgggacatttttaagtcagacacttacactagttcttgcttggtgtttttc-t 419  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||| ||| |||||||||||| ||||| ||||||||||||   |  |||||||| |    
T  24529046 actctacccttatataaacactttctagttggtgtggctcaccaatgtaggatatttttaagtcacacactcacactagttcttatattatgtttttctt 24529145  T
Q  420 atccaattttctcactagattcaagtagtgttccaaca 457  Q
    ||||||||||||||||||||| || |||||||||||||    
T  24529146 atccaattttctcactagatttaactagtgttccaaca 24529183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 325 - 457
Target Start/End: Complemental strand, 28291975 - 28291842
Alignment:
Q  325 tacccttatataaaccctttctagttggtgtggcttaccaatgtgggacatttttaagtcagacacttacactagttcttgcttggtgtttttc-tatcc 423  Q
    ||||||||||||||| ||||||||||||||| ||| |||||| |||||||||||||||||| || || ||||||||||||   | ||||||||| |||||    
T  28291975 tacccttatataaacactttctagttggtgtagctcaccaatatgggacatttttaagtcacacgctcacactagttcttatattgtgtttttcttatcc 28291876  T
Q  424 aattttctcactagattcaagtagtgttccaaca 457  Q
    |||||||| | |||||| || |||||||||||||    
T  28291875 aattttctaattagatttaactagtgttccaaca 28291842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 215 - 306
Target Start/End: Complemental strand, 28292171 - 28292078
Alignment:
Q  215 ataatgattagattaattaaataattaatttaacattttcaagtgacaa-aaaatatatattattttccacccaag-cccaagcccggcccggt 306  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |  ||||||||||||||||    
T  28292171 ataatgattagattaattaaataattaatttatcattttcaagtgacaaaaaaatatatattattttccacccacgatccaagcccggcccggt 28292078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 117 - 178
Target Start/End: Complemental strand, 28292234 - 28292173
Alignment:
Q  117 ttttgtttcttaattggatatatccagaaacttctggatacgcgttttggatcgggtcggat 178  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  28292234 ttttgtttcttaattggatatatccggaaacttctggatactcgttttggatcgggtcggat 28292173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 47761936 - 47762004
Alignment:
Q  4 tgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaac 72  Q
    ||||||||||||||| |||||||||||||| |||||||| ||||||||| |||||||||||||||||||    
T  47761936 tgtgaatttcggtgtaaagaatgagtggggcgagctctcattttataggcagagttcgtaacaaaaaac 47762004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 240 - 315
Target Start/End: Original strand, 7357825 - 7357903
Alignment:
Q  240 taatttaacattttcaagtgacaaaaa-atatatattattttcc-acccaagc-ccaagcccggcccggtcggacggcg 315  Q
    ||||||||||||| ||||||||||||| |||||||||||||| | ||||| |  |||||||||||||||||||||||||    
T  7357825 taatttaacatttccaagtgacaaaaagatatatattatttttctacccacgatccaagcccggcccggtcggacggcg 7357903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 410 - 457
Target Start/End: Original strand, 10437408 - 10437456
Alignment:
Q  410 gtgtttttct-atccaattttctcactagattcaagtagtgttccaaca 457  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||    
T  10437408 gtgtttttcttatccaattttctcactagattcaactagtgttccaaca 10437456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 410 - 457
Target Start/End: Original strand, 10451118 - 10451166
Alignment:
Q  410 gtgtttttct-atccaattttctcactagattcaagtagtgttccaaca 457  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||    
T  10451118 gtgtttttcttatccaattttctcactagattcaactagtgttccaaca 10451166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 330 - 457
Target Start/End: Original strand, 47762377 - 47762497
Alignment:
Q  330 ttatataaaccctttctagttggtgtggcttaccaatgtgggacatttttaagtcagacacttacactagttcttgcttggtgtttttctatccaatttt 429  Q
    ||||||||||  || ||||||||||||||| || ||||||| ||||||||||||||       |||||||||||| | | |||||||||||| |||||||    
T  47762377 ttatataaacatttactagttggtgtggctcactaatgtggaacatttttaagtca------cacactagttcttacattgtgtttttctattcaatttt 47762470  T
Q  430 ctcactagattcaagtagtgttccaaca 457  Q
     |||||||| | |  |||||||||||||    
T  47762471 -tcactagacttagctagtgttccaaca 47762497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 208 - 294
Target Start/End: Complemental strand, 24169616 - 24169533
Alignment:
Q  208 ctttcggataatgattagattaattaaataattaatttaacattttcaagtgacaaaaaatatatattattttccacccaagcccaa 294  Q
    ||||| ||||||||||| |||||| |||  ||||||||||||||||||| ||| ||||||||||| || ||||  ||||||||||||    
T  24169616 ctttcagataatgattaaattaataaaa--attaatttaacattttcaaatgataaaaaatatat-ttctttttgacccaagcccaa 24169533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 547 - 626
Target Start/End: Original strand, 36215868 - 36215947
Alignment:
Q  547 tttctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctcccaaacttccctaatattt 626  Q
    ||||||||||||||||| | |||| ||| | ||||||| ||||||||| || ||||| ||||||||| |||||| |||||    
T  36215868 tttctttgcaaatatcaaagagaagttgttgttgtaaagacacttgtccaacatttttctcccaaacctccctagtattt 36215947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 7874874 - 7874816
Alignment:
Q  10 tttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaa 68  Q
    |||||||||||||||| |||| || |||||||||||||| ||| | |||||||||||||    
T  7874874 tttcggtgtgaagaataagtgaggcgagctctccttttaaagggaaagttcgtaacaaa 7874816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 266
Target Start/End: Complemental strand, 7874731 - 7874630
Alignment:
Q  163 ttggatcgggtcggatcgtaacaattttatttgttacttgtagcactttcggataatgattagattaattaaataattaatttaacattttcaagtgaca 262  Q
    ||||||||| || ||| ||||||| ||||||||||||    ||  |||| |||||||||||| |||||  ||| |||||||||||||||||||||||| |    
T  7874731 ttggatcggatcagattgtaacaaatttatttgttacgaa-agtgcttttggataatgattaaattaacaaaa-aattaatttaacattttcaagtgata 7874634  T
Q  263 aaaa 266  Q
    ||||    
T  7874633 aaaa 7874630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 24169813 - 24169772
Alignment:
Q  27 agtggggtgagctctccttttataggaagagttcgtaacaaa 68  Q
    ||||||| |||||||||||||||||| ||||||||| |||||    
T  24169813 agtggggcgagctctccttttatagggagagttcgtgacaaa 24169772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 28292291 - 28292247
Alignment:
Q  1 gactgtgaatttcggtgtgaagaatgagtggggtgagctctcctt 45  Q
    ||||||| | |||||||||||||||||| |||| |||||||||||    
T  28292291 gactgtggaattcggtgtgaagaatgaggggggcgagctctcctt 28292247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 124; Significance: 2e-63; HSPs: 4)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 1873 - 2150
Alignment:
Q  1 gactgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaagtcgacttaa 100  Q
    ||||||| | |||||| | ||||||||| || | ||||||||||||||||||| |||||||||||  |||||  || ||||||||||||||||  |||||    
T  1873 gactgtggaattcggtttaaagaatgaggggcgcgagctctccttttataggatgagttcgtaaccgaaaacgagacacttggggattaagtcagcttaa 1972  T
Q  101 tcctcaagtaaacgcgttttgtttcttaattggatatatccagaaacttctggatacgcgttttggatcgggtcggatcgtaacaattttatttgttact 200  Q
    |||||||||||| || ||||||| ||||||||||||||||| ||  | |           ||||||||||| || ||||||| |||||| |||||||||     
T  1973 tcctcaagtaaatgcattttgttccttaattggatatatccggactcgt-----------ttttggatcggatcagatcgtatcaatttcatttgttacg 2061  T
Q  201 tgtagcactttcggataatgattagattaattaaataattaatttaacattttcaagtgac--aaaaaatatatattattttccaccca 287  Q
     ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  2062 cgtagcgctttcggataatgattagattaattaaataattaatttaacattttcaagtgacaaaaaaaatatatattattttccaccca 2150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 7354 - 7494
Alignment:
Q  1 gactgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaagtcgacttaa 100  Q
    ||||||| | |||||||| ||||||||| |||| ||||||||||||||||||| |||||||||||  |||||  |||||||||||||||||||| |||||    
T  7354 gactgtggaattcggtgtaaagaatgaggggggcgagctctccttttataggatgagttcgtaaccgaaaacgagagacttggggattaagtcggcttaa 7453  T
Q  101 tcctcaagtaaacgcgttttgtttcttaattggatatatcc 141  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  7454 tcctcaagtaaacgcgttttgttccttaattggatatatcc 7494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 324 - 457
Target Start/End: Original strand, 7539 - 7674
Alignment:
Q  324 ctacccttatataaaccctttctagttggtgtggcttaccaatgtgggaca-tttttaagtcagacacttacactagttcttgcttggtgtttttc-tat 421  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||| ||||| |||||||||||| | | ||||||||| |||    
T  7539 ctacccttatataaacactttctagttggtgtggctcaccaatgtgggacattttttaagtcacacactcacactagttctttcattgtgtttttcttat 7638  T
Q  422 ccaattttctcactagattcaagtagtgttccaaca 457  Q
    |||||||||||||||| ||||| |||||||||||||    
T  7639 ccaattttctcactaggttcaactagtgttccaaca 7674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #4
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 325 - 457
Target Start/End: Original strand, 2286 - 2420
Alignment:
Q  325 tacccttatataaaccctttctagttggtgtggcttaccaatgtgggaca-tttttaagtcagacacttacactagttcttgcttggtgtttttc-tatc 422  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||| ||||| |||||||||||| | | ||||||||| ||||    
T  2286 tacccttatataaacactttctagttggtgtggctcaccaatgtgggacattttttaagtcacacactcacactagttctttcattgtgtttttcttatc 2385  T
Q  423 caattttctcactagattcaagtagtgttccaaca 457  Q
    ||||||||||||||| ||||| |||||||||||||    
T  2386 caattttctcactaggttcaactagtgttccaaca 2420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 122; Significance: 3e-62; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 11 - 287
Target Start/End: Original strand, 31030846 - 31031115
Alignment:
Q  11 ttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaagtcgacttaatcctcaagta 110  Q
    |||||||| ||||||||| |||| ||||||||||||||||||| ||||||||||||||||||  |  |||| |||||||||||  ||||||||| ||| |    
T  31030846 ttcggtgtaaagaatgaggggggcgagctctccttttataggaggagttcgtaacaaaaaacgagttacttagggattaagtctgcttaatccttaagca 31030945  T
Q  111 aacgcg-ttttgtttcttaattggatatatccagaaacttctggatacgcgttttggatcgggtcggatcgtaacaattttatttgttacttgtagcact 209  Q
    |||||| ||||||||||||||| ||||||||| ||||||||||||||| ||||||          ||||||||||||  | |  ||||||  ||||| ||    
T  31030946 aacgcgtttttgtttcttaatttgatatatccggaaacttctggatactcgtttt----------ggatcgtaacaacctcacgtgttacgcgtagcgct 31031035  T
Q  210 ttcggataatgattagattaattaaataattaatttaacattttcaagtgac--aaaaaatatatattattttccaccca 287  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||| |||||||||||||||||||    
T  31031036 ttcggataatgattagattaattaaataattaatttatcattttcaagtgacaaaaaaaaaatatattattttccaccca 31031115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 321 - 457
Target Start/End: Original strand, 19430689 - 19430826
Alignment:
Q  321 actctacccttatataaaccctttctagttggtgtggcttaccaatgtgggacatttttaagtcagacacttacactagttcttgcttggtgtttttc-t 419  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||   | ||||||||| |    
T  19430689 actctacccttatataaacactttctagttggtgtggctcaccaatgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttctt 19430788  T
Q  420 atccaattttctcactagattcaagtagtgttccaaca 457  Q
    ||||||||||||||||||||| || |||||||||||||    
T  19430789 atccaattttctcactagatttaactagtgttccaaca 19430826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 321 - 457
Target Start/End: Original strand, 19566838 - 19566975
Alignment:
Q  321 actctacccttatataaaccctttctagttggtgtggcttaccaatgtgggacatttttaagtcagacacttacactagttcttgcttggtgtttttc-t 419  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||   | ||||||||| |    
T  19566838 actctacccttatataaacactttctagttggtgtggctcaccaatgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttctt 19566937  T
Q  420 atccaattttctcactagattcaagtagtgttccaaca 457  Q
    ||||||||||||||||||||| || |||||||||||||    
T  19566938 atccaattttctcactagatttaactagtgttccaaca 19566975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 325 - 457
Target Start/End: Original strand, 19436135 - 19436268
Alignment:
Q  325 tacccttatataaaccctttctagttggtgtggcttaccaatgtgggacatttttaagtcagacacttacactagttcttgcttggtgtttttc-tatcc 423  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||   | ||||||||| |||||    
T  19436135 tacccttatataaacactttctagttggtgtggctcaccaatgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatcc 19436234  T
Q  424 aattttctcactagattcaagtagtgttccaaca 457  Q
    ||||||||||||||||| || |||||||||||||    
T  19436235 aattttctcactagatttaactagtgttccaaca 19436268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 325 - 457
Target Start/End: Original strand, 19572284 - 19572417
Alignment:
Q  325 tacccttatataaaccctttctagttggtgtggcttaccaatgtgggacatttttaagtcagacacttacactagttcttgcttggtgtttttc-tatcc 423  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||   | ||||||||| |||||    
T  19572284 tacccttatataaacactttctagttggtgtggctcaccaatgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatcc 19572383  T
Q  424 aattttctcactagattcaagtagtgttccaaca 457  Q
    ||||||||||||||||| || |||||||||||||    
T  19572384 aattttctcactagatttaactagtgttccaaca 19572417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 2 - 177
Target Start/End: Original strand, 19430320 - 19430494
Alignment:
Q  2 actgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaagtcgacttaat 101  Q
    |||| ||| |||| ||| ||||||||| |||| ||||||||||||||||||| |||||| |||||||||||  |  |||| |||||||||||  ||||||    
T  19430320 actgcgaaattcgatgtaaagaatgaggggggcgagctctccttttataggaggagttcataacaaaaaacgagttacttagggattaagtctgcttaat 19430419  T
Q  102 cctcaagtaaacgcgttttgtttcttaattggatatatccagaaacttctggatacgcgttttggatcgggtcgga 177  Q
    ||| ||| ||||||||||| | | |||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  19430420 ccttaagcaaacgcgtttt-tgttttaattggatatatccggaaacttctggatactcgttttggatcgggtcgga 19430494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 2 - 177
Target Start/End: Original strand, 19566469 - 19566643
Alignment:
Q  2 actgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaagtcgacttaat 101  Q
    |||| ||| |||| ||| ||||||||| |||| ||||||||||||||||||| |||||| |||||||||||  |  |||| |||||||||||  ||||||    
T  19566469 actgcgaaattcgatgtaaagaatgaggggggcgagctctccttttataggaggagttcataacaaaaaacgagttacttagggattaagtctgcttaat 19566568  T
Q  102 cctcaagtaaacgcgttttgtttcttaattggatatatccagaaacttctggatacgcgttttggatcgggtcgga 177  Q
    ||| ||| ||||||||||| | | |||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  19566569 ccttaagcaaacgcgtttt-tgttttaattggatatatccggaaacttctggatactcgttttggatcgggtcgga 19566643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 318 - 458
Target Start/End: Complemental strand, 33616204 - 33616063
Alignment:
Q  318 gttactctacccttatataaaccctttctagttggtgtggcttaccaatgtgggacatttttaagtcagacacttacactagttcttgcttggtgttttt 417  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||| || | ||| ||||||||||||   | || |||||    
T  33616204 gttactctacccttatataaacactttctagttggtgtggctcaccaatgtgagacatttttaagccacatactcacactagttcttatattgtattttt 33616105  T
Q  418 c-tatccaattttctcactagattcaagtagtgttccaacat 458  Q
    | |||||||||||||||||||||| || || |||||||||||    
T  33616104 cttatccaattttctcactagatttaactaatgttccaacat 33616063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 321 - 458
Target Start/End: Original strand, 31031214 - 31031350
Alignment:
Q  321 actctacccttatataaaccctttctagttggtgtggcttaccaatgtgggacatttttaagtcagacacttacactagttcttgcttggtgtttttc-t 419  Q
    |||||||||||||||| ||  |||||||||||||||||| ||||||||| ||||||||||||||| ||||| ||||||||||||     ||||||||| |    
T  31031214 actctacccttatatatac--tttctagttggtgtggctcaccaatgtgagacatttttaagtcacacactcacactagttcttataatgtgtttttctt 31031311  T
Q  420 atccaattttctcactagattcaagtagtgttccaacat 458  Q
    |||||||||||||| |||||| || ||||||||||||||    
T  31031312 atccaattttctcattagatttaactagtgttccaacat 31031350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 221 - 305
Target Start/End: Complemental strand, 33616385 - 33616300
Alignment:
Q  221 attagattaattaaataattaatttaacattttcaagtgacaaaaaatatatattattttccaccca-agcccaagcccggcccgg 305  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||    
T  33616385 attagattaattaaataattaatttatcattttcaagtgacaaaaaatatatattattttccacccaccacccaagcccggcccgg 33616300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 202 - 287
Target Start/End: Original strand, 19435913 - 19435999
Alignment:
Q  202 gtagcactttcggataatgattagattaattaaataattaatttaacattttcaagtgac-aaaaaatatatattattttccaccca 287  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||| ||||||    
T  19435913 gtagcgctttcggataatgattagattaattaaataattaatttatcattttcaagtgacaaaaaaatatattttatttttcaccca 19435999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 202 - 287
Target Start/End: Original strand, 19572062 - 19572148
Alignment:
Q  202 gtagcactttcggataatgattagattaattaaataattaatttaacattttcaagtgac-aaaaaatatatattattttccaccca 287  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||| ||||||    
T  19572062 gtagcgctttcggataatgattagattaattaaataattaatttatcattttcaagtgacaaaaaaatatattttatttttcaccca 19572148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 321 - 457
Target Start/End: Original strand, 13584826 - 13584968
Alignment:
Q  321 actctacccttatataaaccctttctagttggtgtggcttaccaatgtgggacatttttaagtcagacacttacactagttcttgcttggtgttttt--- 417  Q
    ||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||| || || |||||| |||||   | ||||||||       
T  13584826 actctacccgtatataaacactttctagttggtgtggctcaccaatgtgggacatttttaaatcacacgctcacactaattcttatattgtgtttttttt 13584925  T
Q  418 ---ctatccaattttctcactagattcaagtagtgttccaaca 457  Q
        |||||||||||||||||||||| || |||||||||||||    
T  13584926 ttcttatccaattttctcactagatttaactagtgttccaaca 13584968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 33616514 - 33616395
Alignment:
Q  1 gactgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaagtcgacttaa 100  Q
    ||||||| | |||||||| ||||||||| |||| ||||||||||||||||||| |||||| |||||||||||  |  |||| |||||||||||  |||||    
T  33616514 gactgtggaattcggtgtaaagaatgaggggggcgagctctccttttataggaggagttcataacaaaaaacgagttacttagggattaagtctgcttaa 33616415  T
Q  101 tcctcaagtaaacgcgtttt 120  Q
    |||| ||| |||||||||||    
T  33616414 tccttaagcaaacgcgtttt 33616395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 239 - 319
Target Start/End: Original strand, 13584665 - 13584742
Alignment:
Q  239 ttaatttaacattttcaagtgacaaaaaatatatattattttccacccaagcccaagcccggcccggtcggacggcggcgt 319  Q
    |||||||| |||||||||||||||||||  ||||||||||||||||||||||||  ||||||  |||||||||||||||||    
T  13584665 ttaatttatcattttcaagtgacaaaaa--atatattattttccacccaagccc-ggcccggttcggtcggacggcggcgt 13584742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 177
Target Start/End: Original strand, 19435858 - 19435909
Alignment:
Q  126 ttaattggatatatccagaaacttctggatacgcgttttggatcgggtcgga 177  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  19435858 ttaattggatatatccggaaacttctggatactcgttttggatcgggtcgga 19435909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 177
Target Start/End: Original strand, 19572007 - 19572058
Alignment:
Q  126 ttaattggatatatccagaaacttctggatacgcgttttggatcgggtcgga 177  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  19572007 ttaattggatatatccggaaacttctggatactcgttttggatcgggtcgga 19572058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 33848315 - 33848386
Alignment:
Q  2 actgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagag-ttcgtaacaaaaaac 72  Q
    ||||||||||||||||| |||||| |||| || |||||||||||||||||| |||| |||||||||||||||    
T  33848315 actgtgaatttcggtgtaaagaataagtgaggcgagctctccttttatagggagagtttcgtaacaaaaaac 33848386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 238 - 306
Target Start/End: Original strand, 19430517 - 19430587
Alignment:
Q  238 attaatttaacattttcaagtgac-aaaaaatatatattattttccacccaag-cccaagcccggcccggt 306  Q
    ||||||||| |||||||||||||| ||||||||||| ||||||| |||||| | |||||||||||||||||    
T  19430517 attaatttatcattttcaagtgacaaaaaaatatattttatttttcacccacgacccaagcccggcccggt 19430587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 238 - 306
Target Start/End: Original strand, 19566666 - 19566736
Alignment:
Q  238 attaatttaacattttcaagtgac-aaaaaatatatattattttccacccaag-cccaagcccggcccggt 306  Q
    ||||||||| |||||||||||||| ||||||||||| ||||||| |||||| | |||||||||||||||||    
T  19566666 attaatttatcattttcaagtgacaaaaaaatatattttatttttcacccacgacccaagcccggcccggt 19566736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 3e-62; HSPs: 34)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 20 - 294
Target Start/End: Complemental strand, 17290132 - 17289855
Alignment:
Q  20 aagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgag--acttggggattaagtcgacttaatcctcaagtaaacgcgt 117  Q
    |||||||||||||| ||| |||||||||| ||| ||||||||||||||||||   |||  ||||||||||||||||| |||||| || ||||||||||||    
T  17290132 aagaatgagtggggcgagatctccttttacagggagagttcgtaacaaaaaaaacgagtgacttggggattaagtcggcttaattctgaagtaaacgcgt 17290033  T
Q  118 tttgtttcttaattggatatatccagaaacttctggatacgcgttttggatcgggtcggatcgtaacaattttatttgttacttgtagcactttcgg--a 215  Q
    |||||||||||||||||||||||| ||| ||| || | ||||||||| ||||||||||||||||||||| ||||||||||||  ||||  ||||| |  |    
T  17290032 tttgtttcttaattggatatatccggaagcttttgaaaacgcgttttagatcgggtcggatcgtaacaa-tttatttgttacgcgtagtgctttcagata 17289934  T
Q  216 taatgattagattaattaaataattaatttaacattttcaagtgacaaaa-aatatatattattttccacccaagcccaa 294  Q
    |||||| || ||||||||| ||||||||||||||||||||||||| |||| |||||| || |||||  ||||||||||||    
T  17289933 taatgactaaattaattaattaattaatttaacattttcaagtgataaaataatatacatcatttt-gacccaagcccaa 17289855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 123 - 309
Target Start/End: Original strand, 19478512 - 19478692
Alignment:
Q  123 ttcttaattggatatatccagaaacttctggatacgcgttttggatcgggtcggatcgtaacaattttatttgttacttgtagcactttcggataatgat 222  Q
    |||||||||||||||||||  |||||||||||||| ||||||||||||          ||| |||||||||||||||  |||||||||||||||||||||    
T  19478512 ttcttaattggatatatccgaaaacttctggatactcgttttggatcg----------taaaaattttatttgttacgcgtagcactttcggataatgat 19478601  T
Q  223 tagattaattaaataattaatttaacattttcaagtgacaaaaa---atatatattattttccacccaag-cccaagcccggcccggtcgg 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||| | ||||||||||| ||||||||    
T  19478602 tagattaattaaataattaatttaacattttcaagtgacaaaaaaatatatatattattttccacccacgacccaagcccggtccggtcgg 19478692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 318 - 457
Target Start/End: Original strand, 19478791 - 19478931
Alignment:
Q  318 gttactctacccttatataaaccctttctagttggtgtggcttaccaatgtgggacatttttaagtcagacacttacactagttcttgcttggtgttttt 417  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||| | | ||||||||    
T  19478791 gttactctacccttatataaacactttctagttggtgtggctcaccaatgtgggacatttttaagtcacacactcacactagttcttacattgtgttttt 19478890  T
Q  418 c-tatccaattttctcactagattcaagtagtgttccaaca 457  Q
    | ||||||||||||||||||||||||| |||||||||||||    
T  19478891 cttatccaattttctcactagattcaactagtgttccaaca 19478931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 6 - 161
Target Start/End: Complemental strand, 17281348 - 17281189
Alignment:
Q  6 tgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaa----cttgagacttggggattaagtcgacttaat 101  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||    |  | |||||||||||||||||| ||||||    
T  17281348 tgaatttcggtgttaagaatgagtggggtgagctctccttttatagggagagtttgtaacaaaaaaaaaacgagtgacttggggattaagtcggcttaat 17281249  T
Q  102 cctcaagtaaacgcgttttgtttcttaattggatatatccagaaacttctggatacgcgt 161  Q
    ||| ||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||    
T  17281248 cctgaagtaaacgcgttttgtttcttaatcggatatatccggaagcttctggatacgcgt 17281189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 321 - 457
Target Start/End: Complemental strand, 17289741 - 17289607
Alignment:
Q  321 actctacccttatataaaccctttctagttggtgtggcttaccaatgtgggacatttttaagtcagacacttacactagttcttgcttggtgtttttcta 420  Q
    ||||||||||||||||||| ||| || |||||||||||| ||||||||||||||||||||||||| ||||  |||||||||||| | | |||||||||||    
T  17289741 actctacccttatataaacacttgcttgttggtgtggctcaccaatgtgggacatttttaagtcacacac--acactagttcttacattgtgtttttcta 17289644  T
Q  421 tccaattttctcactagattcaagtagtgttccaaca 457  Q
    ||||||||||||||||||||||| |||||||||||||    
T  17289643 tccaattttctcactagattcaactagtgttccaaca 17289607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 2 - 157
Target Start/End: Complemental strand, 11956490 - 11956334
Alignment:
Q  2 actgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaagtcgacttaat 101  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||  | |||||  ||||||||||  ||||||    
T  11956490 actgtgaatttcggtgtaaagaatgagtggggagagctctccttttataggtagagttcgtaacaaaaaacgagtgacttaaggattaagtcagcttaat 11956391  T
Q  102 cctcaagtaaacgcgttt-tgtttcttaattggatatatccagaaacttctggatac 157  Q
    ||| ||| || ||| ||| ||||||||| |||||||||||| |||| ||||||||||    
T  11956390 ccttaagcaaccgcatttatgtttcttagttggatatatccggaaaattctggatac 11956334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 321 - 457
Target Start/End: Original strand, 10485755 - 10485890
Alignment:
Q  321 actctacccttatataaaccctttctagttggtgtggcttaccaatgtgggacatttttaagtcagacacttacactagttcttgcttggtgtttttcta 420  Q
    ||||||||||||||||||| ||| ||||||||||||||| |||||||||| |||||||||||||  ||||  |||||||||||| | | |||||||||||    
T  10485755 actctacccttatataaacacttgctagttggtgtggctcaccaatgtggaacatttttaagtctcacac--acactagttcttacattgtgtttttcta 10485852  T
Q  421 tccaa-ttttctcactagattcaagtagtgttccaaca 457  Q
    ||||| ||||||||||||||| || |||| ||||||||    
T  10485853 tccaatttttctcactagatttaactagtattccaaca 10485890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 116 - 199
Target Start/End: Original strand, 10485472 - 10485555
Alignment:
Q  116 gttttgtttcttaattggatatatccagaaacttctggatacgcgttttggatcgggtcggatcgtaacaattttatttgttac 199  Q
    ||||||||||||||| | |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  10485472 gttttgtttcttaatagaatatatccggaaacttctgaatacgcgttttggatcgggtcggatcgtaacaattttatttgttac 10485555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 321 - 454
Target Start/End: Complemental strand, 17280994 - 17280865
Alignment:
Q  321 actctacccttatataaaccctttctagttggtgtggcttaccaatgtgggacatttttaagtcagacacttacactagttcttgcttggtgtttttcta 420  Q
    ||||||||||||||||||| ||| ||||||| | ||||| |||||||||  |||||||||||||| ||    |||||||||||| | |  | ||||||||    
T  17280994 actctacccttatataaacacttgctagttgatatggctcaccaatgtgaaacatttttaagtcacac----acactagttcttacattctatttttcta 17280899  T
Q  421 tccaattttctcactagattcaagtagtgttcca 454  Q
    ||||||||||||||||||||||| || |||||||    
T  17280898 tccaattttctcactagattcaactaatgttcca 17280865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 326 - 457
Target Start/End: Complemental strand, 11956191 - 11956064
Alignment:
Q  326 acccttatataaaccctttctagttggtgtggcttaccaatgtgggacatttttaagtcagacacttacactagttcttgcttggtgtttttctatccaa 425  Q
    |||||||||||||| |||||||||| |||||||| ||| |||||| |||||||||||||| ||||  |||||||||||| | | |  |||||||||||||    
T  11956191 acccttatataaacactttctagttagtgtggctcacctatgtggaacatttttaagtcatacac--acactagttcttaccttgcatttttctatccaa 11956094  T
Q  426 ttttctcactagattcaagtagtgttccaaca 457  Q
     ||   ||||||| |||| |||||||||||||    
T  11956093 ctt--ccactagaatcaactagtgttccaaca 11956064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 4 - 169
Target Start/End: Original strand, 3902226 - 3902391
Alignment:
Q  4 tgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaagtc-gacttaatc 102  Q
    |||||||||| |||| |||||||||||||| || ||||||||||||||| ||||||||||||||||||   | ||||   |||||||||| |||||||||    
T  3902226 tgtgaatttcagtgtaaagaatgagtgggg-gaactctccttttataggcagagttcgtaacaaaaaatgagtgactcaaggattaagtctgacttaatc 3902324  T
Q  103 ctcaagtaaacgcg-ttttgtttcttaattggatatatccagaaacttctggatacgcgttttggatc 169  Q
    || ||| |||| || |||||||||  | ||||||||||||  |||  || |||||||||||| |||||    
T  3902325 cttaagcaaacacgtttttgtttc-aagttggatatatccgtaaaaatccggatacgcgtttaggatc 3902391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 508 - 651
Target Start/End: Original strand, 5133842 - 5133985
Alignment:
Q  508 tattttttccttcctcaatgttatgtatcttggtcgatatttctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctc 607  Q
    |||||||||||  ||||||||| |||||||| || |  |||||||||   |||||| | |||| ||| |||||||| | |||||| | || |||| ||||    
T  5133842 tattttttcctgactcaatgttttgtatcttagttgtcatttctttgttgatatcaaacagaagttgttcttgtaattccacttgaccaaaatttcgctc 5133941  T
Q  608 ccaaacttccctaatatttgcgacgaagctcttaccatcaaaat 651  Q
    ||||||||||||||||||||| | ||||||| |||| |||||||    
T  5133942 ccaaacttccctaatatttgcaaggaagctcctaccttcaaaat 5133985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 2 - 274
Target Start/End: Original strand, 3902582 - 3902847
Alignment:
Q  2 actgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaagtcgacttaat 101  Q
    |||||||||||| |||| ||||||||||| || || ||||||||||||||| |||||||||||||||||||  | ||||   ||||||||||  ||||||    
T  3902582 actgtgaatttcagtgtaaagaatgagtgcgg-gaactctccttttataggcagagttcgtaacaaaaaacgagtgactcaaggattaagtcagcttaat 3902680  T
Q  102 cctcaagtaaacgcgtttt-gtttcttaattggatatatccagaaacttctggatacgcgttttggatcgggtcggatcgtaacaattttatttgttact 200  Q
    ||| ||| |||| |||||| |||||  | ||||||||||||  |||  || |||||||| ||| ||||| |          ||||| |||||||||||      
T  3902681 ccttaagcaaacacgtttttgtttca-agttggatatatccgtaaaaatccggatacgcatttaggatcag----------aacaaatttatttgttata 3902769  T
Q  201 -tgtagcactttcggataatgatta----gattaattaaataattaatttaacattttcaagtgacaaaaaatatatat 274  Q
     |||  | |||||||||||||||||     ||||||||| ||||||||||| ||||||||||||| |||||||||||||    
T  3902770 ctgtgacgctttcggataatgattaaattaattaattaattaattaatttatcattttcaagtga-aaaaaatatatat 3902847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 547 - 653
Target Start/End: Original strand, 5183928 - 5184034
Alignment:
Q  547 tttctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctcccaaacttccctaatatttgcgacgaagctcttaccatc 646  Q
    |||| ||||| |||||| | |||||||| | ||||||||| | | ||| || |||||||||||||||||||||||||||||| | ||||||| |||| ||    
T  5183928 tttcattgcatatatcaaagagaatttgtttttgtaaatatattggtccaacattttgctcccaaacttccctaatatttgcaaggaagctcctaccctc 5184027  T
Q  647 aaaattg 653  Q
    |||||||    
T  5184028 aaaattg 5184034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 326 - 457
Target Start/End: Original strand, 29326257 - 29326383
Alignment:
Q  326 acccttatataaaccctttctagttggtgtggcttaccaatgtgggacatttttaagtcagacacttacactagttcttgcttggtgtttttctatccaa 425  Q
    |||||||||||||| ||| |||||||||||| || ||||||||| |||||||||||||    |||  |||||| ||||| | | ||||||||||||||||    
T  29326257 acccttatataaacacttgctagttggtgtgcctcaccaatgtgagacatttttaagt----cacgcacactaattcttacatagtgtttttctatccaa 29326352  T
Q  426 ttttctcactagattcaagtagtgttccaaca 457  Q
     ||| |||||||| | || |||||||||||||    
T  29326353 cttt-tcactagaattaactagtgttccaaca 29326383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 508 - 653
Target Start/End: Original strand, 5692048 - 5692193
Alignment:
Q  508 tattttttccttcctcaatgttatgtatcttggtcgatatttctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctc 607  Q
    ||||||||||| | |||||||| ||||| ||||||| | ||||||||||||||||  | |||| ||| |  |||||| | ||||||| || |||||||      
T  5692048 tattttttcctgcatcaatgttttgtatattggtcgttgtttctttgcaaatatcggagagaagttgttgctgtaaagatacttgtccaacattttgcat 5692147  T
Q  608 ccaaacttccctaatatttgcgacgaagctcttaccatcaaaattg 653  Q
    |||||||||||| |||||||| | ||||||| | || |||||||||    
T  5692148 ccaaacttcccttatatttgcaaggaagctccttccttcaaaattg 5692193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 29325851 - 29325915
Alignment:
Q  6 tgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaa 71  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||  |||||||||||||||||    
T  29325851 tgaatttcggtgtaaagaatgagtgggg-gagctctccttttataggctgagttcgtaacaaaaaa 29325915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 29326026 - 29326090
Alignment:
Q  6 tgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaa 71  Q
    ||||||||| ||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  29326026 tgaatttcgctgtaaagaatgagtgggg-gagctctccttttataggcagagttcgtaacaaaaaa 29326090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 546 - 652
Target Start/End: Original strand, 5104847 - 5104953
Alignment:
Q  546 atttctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctcccaaacttccctaatatttgcgacgaagctcttaccat 645  Q
    ||||||||||| |||||| | |||| ||  |||||||||| |||  | | || |||||||||||||||||||||||||||||| | ||||||  ||||||    
T  5104847 atttctttgcagatatcaaagagaagtttttcttgtaaattcacccggccaacattttgctcccaaacttccctaatatttgcaaggaagcttctaccat 5104946  T
Q  646 caaaatt 652  Q
    |||||||    
T  5104947 caaaatt 5104953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 10485382 - 10485436
Alignment:
Q  5 gtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagtt 59  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||    
T  10485382 gtgaatttcggtgtgaagaatgagtggggcgagctctccttttacagggagagtt 10485436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 19478456 - 19478514
Alignment:
Q  2 actgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttc 60  Q
    |||| ||| |||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  19478456 actgcgaaattcggtgtgaagaatgaggggggcgagctctccttttataggaagagttc 19478514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 353 - 457
Target Start/End: Complemental strand, 14450701 - 14450601
Alignment:
Q  353 tgtggcttaccaatgtgggacatttttaagtcagacacttacactagttcttgcttggtgtttttc-tatccaattttctcactagattcaagtagtgtt 451  Q
    ||||||| | ||||||||||||||||||||||| ||||| |||||||||||| | | ||||||||| |||||||||     |||| |||||| |||||||    
T  14450701 tgtggctcatcaatgtgggacatttttaagtcacacactcacactagttcttacattgtgtttttcttatccaatt-----actacattcaactagtgtt 14450607  T
Q  452 ccaaca 457  Q
    ||||||    
T  14450606 ccaaca 14450601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 549 - 653
Target Start/End: Complemental strand, 5368484 - 5368380
Alignment:
Q  549 tctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctcccaaacttccctaatatttgcgacgaagctcttaccatcaa 648  Q
    |||||||| |||||| | |||| ||| |||||||||| ||||| || |  ||||| |||||||||||||||||||||||| | ||||||  |||| ||||    
T  5368484 tctttgcagatatcaaagagaagttgttcttgtaaattcacttttccagcattttcctcccaaacttccctaatatttgcaaggaagcttctaccttcaa 5368385  T
Q  649 aattg 653  Q
    |||||    
T  5368384 aattg 5368380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 521 - 653
Target Start/End: Complemental strand, 5395095 - 5394963
Alignment:
Q  521 ctcaatgttatgtatcttggtcgatatttctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctcccaaacttcccta 620  Q
    ||||||||| |||||||| |||    ||||||||||||||||| | |||| ||| | |||||| |  ||  ||| || |||||||||||| |||||||||    
T  5395095 ctcaatgttttgtatcttagtcttcgtttctttgcaaatatcaaagagaagttgtttttgtaagtcaaccggtccaacattttgctcccacacttcccta 5394996  T
Q  621 atatttgcgacgaagctcttaccatcaaaattg 653  Q
    |||||||| | ||||||| |||| |||||||||    
T  5394995 atatttgcaaggaagctcctaccctcaaaattg 5394963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 549 - 653
Target Start/End: Complemental strand, 5423777 - 5423673
Alignment:
Q  549 tctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctcccaaacttccctaatatttgcgacgaagctcttaccatcaa 648  Q
    |||||||| |||||| | |||| ||| |||||||||| ||||| || |  ||||| |||||||||||||||||||||||| | ||||||  |||| ||||    
T  5423777 tctttgcatatatcaaagagaagttgttcttgtaaattcacttttccagcattttcctcccaaacttccctaatatttgcaaggaagcttctaccttcaa 5423678  T
Q  649 aattg 653  Q
    |||||    
T  5423677 aattg 5423673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 326 - 438
Target Start/End: Original strand, 3902883 - 3902990
Alignment:
Q  326 acccttatataaaccctttctagttggtgtggcttaccaatgtgggacatttttaagtcagacacttacactagttcttgcttggtgtttttctatccaa 425  Q
    |||||||||||||| ||| ||||||||||||  | |||||||| |||||||||||||||  ||    |||||||||||  | | ||||||||||||||||    
T  3902883 acccttatataaacacttgctagttggtgtgattcaccaatgtaggacatttttaagtctcac----acactagttctcacatagtgtttttctatccaa 3902978  T
Q  426 ttttctcactaga 438  Q
    |||| ||||||||    
T  3902979 tttt-tcactaga 3902990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 549 - 651
Target Start/End: Original strand, 5356594 - 5356696
Alignment:
Q  549 tctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctcccaaacttccctaatatttgcgacgaagctcttaccatcaa 648  Q
    |||||||| |||||| | |||| ||| |||||||||| |||||| | |   |||| |||||||||||||||||||||||| | ||||||  |||||||||    
T  5356594 tctttgcagatatcagagagaagttgttcttgtaaattcacttggccagctttttcctcccaaacttccctaatatttgcaaggaagcttctaccatcaa 5356693  T
Q  649 aat 651  Q
    |||    
T  5356694 aat 5356696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 216 - 302
Target Start/End: Original strand, 10643030 - 10643113
Alignment:
Q  216 taatgattagattaattaaataattaatttaacattttcaagtgacaaaaaatatatattattttccacccaagcccaagcccggcc 302  Q
    |||| |||| |||||| ||||| ||||||||||||||||||||||||||||| ||||||| ||||  |||||||||| |||||||||    
T  10643030 taataattaaattaataaaata-ttaatttaacattttcaagtgacaaaaaa-atatatttttttttacccaagccc-agcccggcc 10643113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 549 - 643
Target Start/End: Original strand, 5075709 - 5075803
Alignment:
Q  549 tctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctcccaaacttccctaatatttgcgacgaagctcttacc 643  Q
    ||||||||||||||| | |||| ||| ||||||||| | ||  ||| |  ||||||||||||||||||||| |||||||| | ||||||| ||||    
T  5075709 tctttgcaaatatcaaaaagaagttgttcttgtaaacaaaccggtccatcattttgctcccaaacttccctgatatttgcaaggaagctcctacc 5075803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 263
Target Start/End: Original strand, 29325929 - 29325979
Alignment:
Q  213 ggataatgattagattaattaaataattaatttaacattttcaagtgacaa 263  Q
    |||||||||||| ||| ||||| ||||||||||| ||||||||||||||||    
T  29325929 ggataatgattaaattgattaattaattaatttatcattttcaagtgacaa 29325979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 5600754 - 5600690
Alignment:
Q  6 tgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaa 70  Q
    |||||||||| || |||||| |||| ||  ||||||||||||||||| |||||| ||||||||||    
T  5600754 tgaatttcggagtaaagaataagtgaggcaagctctccttttatagggagagtttgtaacaaaaa 5600690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 271
Target Start/End: Original strand, 10485569 - 10485608
Alignment:
Q  232 taaataattaatttaacattttcaagtgacaaaaaatata 271  Q
    ||| ||||||||||||||||||||||||| ||||||||||    
T  10485569 taattaattaatttaacattttcaagtgataaaaaatata 10485608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 326 - 425
Target Start/End: Original strand, 13660457 - 13660552
Alignment:
Q  326 acccttatataaaccctttctagttggtgtggcttaccaatgtgggacatttttaagtcagacacttacactagttcttgcttggtgtttttctatccaa 425  Q
    |||||||||||||| ||| |||||| |||||||| |||||| |  || |||||||||||| ||    |||||||||||| | |  |||||||||||||||    
T  13660457 acccttatataaacacttgctagttagtgtggctcaccaatataagatatttttaagtcacac----acactagttcttaccttatgtttttctatccaa 13660552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 531 - 652
Target Start/End: Complemental strand, 5174908 - 5174787
Alignment:
Q  531 tgtatcttggtcgatatttctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctcccaaacttccctaatatttgcga 630  Q
    ||||||||||||||  || ||||  | |||||| |||||| ||| | |||||||| |||||||| |  |  |||| ||||||||||||||||||| |  |    
T  5174908 tgtatcttggtcgacgttcctttaaagatatcagatagaagttgttgttgtaaatccacttgtccagcaggttgcccccaaacttccctaatattgggaa 5174809  T
Q  631 cgaagctcttaccatcaaaatt 652  Q
     ||||||| |||| ||||||||    
T  5174808 tgaagctcctaccttcaaaatt 5174787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 6e-48; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 321 - 457
Target Start/End: Original strand, 42915219 - 42915356
Alignment:
Q  321 actctacccttatataaaccctttctagttggtgtggcttaccaatgtgggacatttttaagtcagacacttacactagttcttgcttggtgtttttc-t 419  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||| | | ||||||||| |    
T  42915219 actctacccttatataaacactttctagttggtgtggctcaccaatgtgggacatttttaagtcacacactcacactagttcttacattgtgtttttctt 42915318  T
Q  420 atccaattttctcactagattcaagtagtgttccaaca 457  Q
    |||||||||||||||||||||||| |||||||||||||    
T  42915319 atccaattttctcactagattcaactagtgttccaaca 42915356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 65 - 148
Target Start/End: Original strand, 42914999 - 42915082
Alignment:
Q  65 caaaaaacttgagacttggggattaagtcgacttaatcctcaagtaaacgcgttttgtttcttaattggatatatccagaaact 148  Q
    ||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  42914999 caaaaaacgagagacttggggattaagtcggcttaatcctcaagtaaacgcgttttgtttcttaattggatatatccggaaact 42915082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 321 - 457
Target Start/End: Original strand, 5089734 - 5089872
Alignment:
Q  321 actctacccttatataaaccctttctagttggtgtggcttaccaatgtgggaca-tttttaagtcagacacttacactagttcttgcttggtgtttttc- 418  Q
    |||||| |||||||||||| ||||||| ||||||||||| |||||||||||||| ||||||||||   |||| |||||||||||| | | |||||||||     
T  5089734 actctatccttatataaacactttctaattggtgtggctcaccaatgtgggacattttttaagtcccgcactcacactagttcttacattgtgtttttct 5089833  T
Q  419 tatccaattttctcactagattcaagtagtgttccaaca 457  Q
    |||||||||||||||||| |||||| ||||||| |||||    
T  5089834 tatccaattttctcactaaattcaactagtgtttcaaca 5089872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 5089595 - 5089654
Alignment:
Q  11 ttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaa 70  Q
    |||||||| ||||||||| |||| ||||||||||||||||||||||||||||||| ||||    
T  5089595 ttcggtgtaaagaatgaggggggcgagctctccttttataggaagagttcgtaacgaaaa 5089654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 326 - 385
Target Start/End: Complemental strand, 43111597 - 43111538
Alignment:
Q  326 acccttatataaaccctttctagttggtgtggcttaccaatgtgggacatttttaagtca 385  Q
    |||||||||||||| ||| ||||||||||||||| || ||| ||||||||||||||||||    
T  43111597 acccttatataaacacttgctagttggtgtggctcactaatatgggacatttttaagtca 43111538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 302
Target Start/End: Original strand, 44683587 - 44683671
Alignment:
Q  216 taatgattagattaattaaataattaatttaacattttcaagtgacaaaaaatatatattattttccacccaagcccaagcccggcc 302  Q
    ||||||||| |||||  ||| ||||||| |||||||||||||||||||||||  |||||| ||||  ||||||||||||||| ||||    
T  44683587 taatgattaaattaacaaaaaaattaatgtaacattttcaagtgacaaaaaa-gtatatt-ttttttacccaagcccaagcctggcc 44683671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 545 - 649
Target Start/End: Original strand, 22586289 - 22586393
Alignment:
Q  545 tatttctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctcccaaacttccctaatatttgcgacgaagctcttacca 644  Q
    ||||||||| || |||||| ||| || ||| |||||||||  || ||||| |  || ||||| ||||||||||||||||||||| | ||||||| ||||     
T  22586289 tatttctttacagatatcagataaaagttgttcttgtaaaaccatttgtctaccatcttgcttccaaacttccctaatatttgcaaggaagctcctacct 22586388  T
Q  645 tcaaa 649  Q
    |||||    
T  22586389 tcaaa 22586393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 274
Target Start/End: Original strand, 39959632 - 39959681
Alignment:
Q  225 gattaattaaataattaatttaacattttcaagtgacaaaaaatatatat 274  Q
    |||||| | ||| ||||||||| ||||||||||||| |||||||||||||    
T  39959632 gattaaattaattattaatttatcattttcaagtgataaaaaatatatat 39959681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 86; Significance: 9e-41; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 321 - 457
Target Start/End: Complemental strand, 2558 - 2421
Alignment:
Q  321 actctacccttatataaaccctttctagttggtgtggcttaccaatgtgggacatttttaagtcagacacttacactagttcttgcttggtgtttttc-t 419  Q
    ||||||||||||||||||  ||||||||||||||||||| | ||||||||||||||||||||||| ||||| ||||||||||||   | ||||||||| |    
T  2558 actctacccttatataaatactttctagttggtgtggctcaacaatgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttctt 2459  T
Q  420 atccaattttctcactagattcaagtagtgttccaaca 457  Q
    |||||||||||||||||||||||| |||||||||||||    
T  2458 atccaattttctcactagattcaactagtgttccaaca 2421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 321 - 457
Target Start/End: Complemental strand, 10518 - 10381
Alignment:
Q  321 actctacccttatataaaccctttctagttggtgtggcttaccaatgtgggacatttttaagtcagacacttacactagttcttgcttggtgtttttc-t 419  Q
    ||||||||||||||||||  ||||||||||||||||||| | ||||||||||||||||||||||| ||||| ||||||||||||   | ||||||||| |    
T  10518 actctacccttatataaatactttctagttggtgtggctcaacaatgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttctt 10419  T
Q  420 atccaattttctcactagattcaagtagtgttccaaca 457  Q
    |||||||||||||||||||||||| |||||||||||||    
T  10418 atccaattttctcactagattcaactagtgttccaaca 10381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 33750 - 33629
Alignment:
Q  4 tgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaagtcgacttaatcc 103  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||| | ||||||||||||||| |  | |||||  |||||||||| |||||||||    
T  33750 tgtgaatttcagtgttaagaatgagtggggtgagctctccttttataggcatagttcgtaacaaaaatcgagtgacttaaggattaagtcaacttaatcc 33651  T
Q  104 tcaag-taaacgcgttttgttt 124  Q
    | ||| ||||| ||||||||||    
T  33650 ttaagctaaacacgttttgttt 33629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 329 - 457
Target Start/End: Complemental strand, 33428 - 33305
Alignment:
Q  329 cttatataaaccctttctagttggtgtggcttaccaatgtgggacatttttaagtcagacacttacactagttcttgcttggtgtttttctatccaattt 428  Q
    ||||||||||| ||| ||||||||||||||| | ||||||||||||||||||||||| ||    |||||||||||| | | |||||||||||||||||||    
T  33428 cttatataaacacttgctagttggtgtggctcatcaatgtgggacatttttaagtcacac----acactagttcttacattgtgtttttctatccaattt 33333  T
Q  429 tctcactagattcaagtagtgttccaaca 457  Q
    | |||||||| | || |||| ||||||||    
T  33332 t-tcactagaattaactagtattccaaca 33305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 321 - 459
Target Start/End: Original strand, 14374780 - 14374919
Alignment:
Q  321 actctacccttatataaaccctttctagttggtgtggcttaccaatgtgggacatttttaagtcagacacttacactagttcttgcttggtgtttttct- 419  Q
    ||||| ||||||||||||| |||||||||||| ||| || ||||||||||||||||||||||||| |||   ||||||||||||  | |   || ||||     
T  14374780 actcttcccttatataaacactttctagttggggtgactaaccaatgtgggacatttttaagtcacacaaccacactagttcttagtagtgcttattctc 14374879  T
Q  420 atccaattttctcactagattcaagtagtgttccaacata 459  Q
    ||||||  ||||||||||||| || |||||||||||||||    
T  14374880 atccaaacttctcactagattgaactagtgttccaacata 14374919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 321 - 457
Target Start/End: Complemental strand, 13582119 - 13581981
Alignment:
Q  321 actctacccttatataaaccctttctagttggtgtggcttaccaatgtgggacatttttaagtcagacacttacactagttcttgcttggtg-tttttct 419  Q
    ||||| ||||||||||||| ||| |||||||| ||| || ||||||||||||||||||||||||| | |   ||||||||||||   | ||| || ||||    
T  13582119 actcttcccttatataaacacttactagttggggtgactaaccaatgtgggacatttttaagtcacataaccacactagttcttatgtagtgattattct 13582020  T
Q  420 -atccaattttctcactagattcaagtagtgttccaaca 457  Q
     ||||||||||||||||||||| || |||||||||||||    
T  13582019 catccaattttctcactagattgaactagtgttccaaca 13581981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 321 - 402
Target Start/End: Original strand, 7805729 - 7805810
Alignment:
Q  321 actctacccttatataaaccctttctagttggtgtggcttaccaatgtgggacatttttaagtcagacacttacactagttc 402  Q
    ||||| ||||||||||||| ||| |||||||| ||| || ||||||||||||||||||||||||| |||   ||||||||||    
T  7805729 actcttcccttatataaacacttactagttggggtgactaaccaatgtgggacatttttaagtcacacaaccacactagttc 7805810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 214 - 285
Target Start/End: Original strand, 7805528 - 7805600
Alignment:
Q  214 gataatgattagattaattaaataattaatttaacattttcaagtgac-aaaaaatatatattattttccacc 285  Q
    |||||||| || ||||| ||||||||||||||| |||||||||||||| ||||||||||| | ||||||||||    
T  7805528 gataatgactaaattaaataaataattaatttatcattttcaagtgacaaaaaaatatatttcattttccacc 7805600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 31987034 - 31987101
Alignment:
Q  2 actgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaa 69  Q
    |||||||| ||||| || |||||| |||| || |||||||||||||||||  ||||||||||||||||    
T  31987034 actgtgaacttcggcgtaaagaataagtgaggcgagctctccttttatagtgagagttcgtaacaaaa 31987101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 7805409 - 7805464
Alignment:
Q  35 gagctctccttttataggaagagttcgtaacaaaaaacttgagacttggggattaag 91  Q
    ||||||||||||||||||| ||||||||||| ||||||  || ||||||||||||||    
T  7805409 gagctctccttttataggaggagttcgtaac-aaaaacgagatacttggggattaag 7805464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 234 - 285
Target Start/End: Complemental strand, 13582298 - 13582246
Alignment:
Q  234 aataattaatttaacattttcaagtgacaa-aaaatatatattattttccacc 285  Q
    ||||||||||||| |||||||||||||||| ||||||||| | ||||||||||    
T  13582298 aataattaatttatcattttcaagtgacaaaaaaatatatttcattttccacc 13582246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 13582479 - 13582395
Alignment:
Q  2 actgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaaaacttgagacttgggga 86  Q
    |||||||| |||| ||||   |||||| || | ||||||||||||||||||| |||||| |||||||||||  ||| ||||||||    
T  13582479 actgtgaaattcgatgtgttaaatgaggggagcgagctctccttttataggaggagttcataacaaaaaacgagagtcttgggga 13582395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 267
Target Start/End: Complemental strand, 9362033 - 9362003
Alignment:
Q  237 aattaatttaacattttcaagtgacaaaaaa 267  Q
    |||||||||||||||||||||||||||||||    
T  9362033 aattaatttaacattttcaagtgacaaaaaa 9362003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 267
Target Start/End: Original strand, 14374609 - 14374642
Alignment:
Q  234 aataattaatttaacattttcaagtgacaaaaaa 267  Q
    ||||||||||||| ||||||||||||||||||||    
T  14374609 aataattaatttatcattttcaagtgacaaaaaa 14374642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 294
Target Start/End: Original strand, 31987254 - 31987298
Alignment:
Q  249 attttcaagtgacaaaaaatatatattattttccacccaagcccaa 294  Q
    |||||||||||||||||||||||| || ||||| ||||||||||||    
T  31987254 attttcaagtgacaaaaaatatat-ttcttttcgacccaagcccaa 31987298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 43413 - 43478
Alignment:
Q  4 tgtgaatttcggtgtgaagaatgagtggggtgagctctccttttataggaagagttcgtaacaaaa 69  Q
    |||| ||||| ||||||||||| |||| || | | |||||||||||||  ||||||||||||||||    
T  43413 tgtgtatttcagtgtgaagaataagtgtggcgggatctccttttatagtgagagttcgtaacaaaa 43478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University