View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3906_high_40 (Length: 281)
Name: NF3906_high_40
Description: NF3906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3906_high_40 |
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Alignment Details
Target: chr3 (Bit Score: 151; Significance: 6e-80; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 49150656 - 49150473
Alignment:
| Q |
1 |
aaaaaacagactggacagctgataaagatcaatgtgaacttgcgctgtttcctccaataggacnnnnnnntatggttgaggaaaccttgaatccaatcta |
100 |
Q |
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| T |
49150656 |
aaaaaacagactgggcagctgataaagatcaatgtgaacttgcgctgtttcttccaataggacaaaaaaatatggttgaggaaaccttgaatccaatcta |
49150557 |
T |
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| Q |
101 |
taccttgaggtttcgtgctattctaattacaagccatgcatgcatagttaggatcaattagattttcaatcgctctcaattgtg |
184 |
Q |
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| T |
49150556 |
tactttgaggtttcgtgctattctaattacaagccatgcatgcatagttaggatcaattagattttcaatcgctctcaattgtg |
49150473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 49150290 - 49150248
Alignment:
| Q |
218 |
caaacaggcgcctttgatcctggaatttctgacaccctcgttg |
260 |
Q |
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| T |
49150290 |
caaacaggcgcctttgatcctggaatttctgacaccctcgttg |
49150248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 49150396 - 49150364
Alignment:
| Q |
184 |
gcaccacgaccaagtggtttccaatgctttttt |
216 |
Q |
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| T |
49150396 |
gcaccacgaccaagtggtttccaatgcattttt |
49150364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 16770488 - 16770442
Alignment:
| Q |
214 |
tttccaaacaggcgcctttgatcctggaatttctgacaccctcgttg |
260 |
Q |
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| T |
16770488 |
tttccaaacaggtgcctttgatcctggaatttctgacaccctcgttg |
16770442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 256
Target Start/End: Original strand, 23464963 - 23465005
Alignment:
| Q |
214 |
tttccaaacaggcgcctttgatcctggaatttctgacaccctc |
256 |
Q |
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| T |
23464963 |
tttccaaacaggtgcctttgatcctgaaatttttgacaccctc |
23465005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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