View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3906_high_42 (Length: 267)
Name: NF3906_high_42
Description: NF3906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3906_high_42 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 14 - 267
Target Start/End: Complemental strand, 53006005 - 53005738
Alignment:
| Q |
14 |
gaagttatgattgataagaaatgagattataataaggtacggtgttcatagaaggttgctcggaatgat--------------cagtaagcaattgacta |
99 |
Q |
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| T |
53006005 |
gaagttatgattgataagaaatgagattataataaggtacggtgttcatagaaggttgctcggaatgataacataacagagatcagtaagcaattgacta |
53005906 |
T |
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| Q |
100 |
tactaagatgtcaaatagcgtcctgttcagcattaagtgacaaagtttagcagcaaatattatgtgcactgtaactacatggtttaacggtcaccaaact |
199 |
Q |
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| T |
53005905 |
tactaagatgtcaaatagcgtcctgttcagcattaagtgacaaagtttagcagcaaatactatgtgcactgtaactacatggtttaacggtcaccaaact |
53005806 |
T |
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| Q |
200 |
tcaaaacagaagctgaactgattgcataattaacatagtttccaagcatttagtagatacaatgagtt |
267 |
Q |
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| T |
53005805 |
tcaaaacagaagctgaactgattgcataattaacatagtttccaagcatttagtagatacaatgagtt |
53005738 |
T |
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